miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 193152 0.78 0.512901
Target:  5'- cCGUGUCGUCggcgcacaGCAUCUCAGGAGCCGg -3'
miRNA:   3'- -GCGCAGCGGgg------CGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 192101 0.66 0.985223
Target:  5'- aGCGUCG-CCgGCGUCUCc---ACCu -3'
miRNA:   3'- gCGCAGCgGGgCGUAGAGuuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 190307 0.71 0.894435
Target:  5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3'
miRNA:   3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5'
14308 3' -53.8 NC_003521.1 + 188757 0.69 0.948146
Target:  5'- aGUGUaccgGCCCCGCGUCaUCu---GCCGc -3'
miRNA:   3'- gCGCAg---CGGGGCGUAG-AGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 187715 0.66 0.990897
Target:  5'- uGCGUCGCCagcgguaCGUgacuuGUCUCAuc-GCCa -3'
miRNA:   3'- gCGCAGCGGg------GCG-----UAGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 185775 0.66 0.989673
Target:  5'- cCGCGauggagCGCaagaCGCGUCUCucGGAGCCGc -3'
miRNA:   3'- -GCGCa-----GCGgg--GCGUAGAGu-UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 185693 0.67 0.982893
Target:  5'- cCGCGcCGCgaccuuauuugaggUCCGCGUCUCGccGGGugCGg -3'
miRNA:   3'- -GCGCaGCG--------------GGGCGUAGAGU--UUUugGC- -5'
14308 3' -53.8 NC_003521.1 + 182056 0.68 0.969314
Target:  5'- gCGCGcCGCCCUGCAguggCU---GGACCu -3'
miRNA:   3'- -GCGCaGCGGGGCGUa---GAguuUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 179376 0.69 0.945602
Target:  5'- aCGCGUCGCUCggcucaccucuugaGCGUCUUAAaguuauccAAACCGu -3'
miRNA:   3'- -GCGCAGCGGGg-------------CGUAGAGUU--------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 176224 0.68 0.959681
Target:  5'- gCGUGUCGUCCCGCG-C-CA---GCCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGUaGaGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 171946 0.67 0.97944
Target:  5'- cCGC-UCGCCCCuCAUCacaagagguaCAGGAACCGu -3'
miRNA:   3'- -GCGcAGCGGGGcGUAGa---------GUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 171593 0.73 0.820507
Target:  5'- --gGUCuCCCCGUcUCUCAGAGACCa -3'
miRNA:   3'- gcgCAGcGGGGCGuAGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 171015 0.72 0.852666
Target:  5'- uGUGUCGCCUcaagugcgagCGuCAUCUCGAcgGCCGc -3'
miRNA:   3'- gCGCAGCGGG----------GC-GUAGAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 170611 0.69 0.93935
Target:  5'- uGCG-CGCCaaGCGcUUCGAGGGCCGa -3'
miRNA:   3'- gCGCaGCGGggCGUaGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 169470 0.67 0.981528
Target:  5'- -uCGUCGCCaggCGCGUCgUCGuuGGCCa -3'
miRNA:   3'- gcGCAGCGGg--GCGUAG-AGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 167313 0.68 0.956053
Target:  5'- gGCGUCGCcgaCCUGCuUCUCGAAGcAgCGg -3'
miRNA:   3'- gCGCAGCG---GGGCGuAGAGUUUU-UgGC- -5'
14308 3' -53.8 NC_003521.1 + 166003 0.67 0.978106
Target:  5'- aCGcCGUCGCgcucggcgccguccgUCCGCGUCUCGccgcuACCGc -3'
miRNA:   3'- -GC-GCAGCG---------------GGGCGUAGAGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 161211 0.66 0.988325
Target:  5'- cCGCgGUCGCCCCgGCAagUUCGAugGCgGc -3'
miRNA:   3'- -GCG-CAGCGGGG-CGUa-GAGUUuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 160362 0.71 0.888536
Target:  5'- gGCGUCGCCgCCuuc-CUCAAGAACCc -3'
miRNA:   3'- gCGCAGCGG-GGcguaGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 157131 0.68 0.956053
Target:  5'- cCGCGUCGUCaCCGUcacuGUCUCuuuuuCCGu -3'
miRNA:   3'- -GCGCAGCGG-GGCG----UAGAGuuuuuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.