miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 240629 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 236380 0.78 0.561361
Target:  5'- cCGCaUCGCUCCGCAUgCUCGAGGACUc -3'
miRNA:   3'- -GCGcAGCGGGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 226345 0.69 0.934612
Target:  5'- gCGCG-CGCCCCGCGgguagCgccgCGGGAGCgGc -3'
miRNA:   3'- -GCGCaGCGGGGCGUa----Ga---GUUUUUGgC- -5'
14308 3' -53.8 NC_003521.1 + 225576 0.68 0.966307
Target:  5'- cCGUGUCGUCCUGgCG-CUCGGcgGCCu -3'
miRNA:   3'- -GCGCAGCGGGGC-GUaGAGUUuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 225399 0.66 0.988325
Target:  5'- cCGCGUC-CCUCGCAcccggCUCAAAu-CUGg -3'
miRNA:   3'- -GCGCAGcGGGGCGUa----GAGUUUuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 224345 0.68 0.956053
Target:  5'- aGCGUCGCCgCaCGUAgaccUUCAuGAGGCCGg -3'
miRNA:   3'- gCGCAGCGG-G-GCGUa---GAGU-UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 224254 0.67 0.983454
Target:  5'- cCG-GUCGCCUCGCAggcgcagcuuUCUCGcuuaaAAAGCCc -3'
miRNA:   3'- -GCgCAGCGGGGCGU----------AGAGU-----UUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 222386 0.66 0.989673
Target:  5'- aGCGgcacagGCCgCGCGUCUUGAgcAGGCCGc -3'
miRNA:   3'- gCGCag----CGGgGCGUAGAGUU--UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 220707 0.66 0.988325
Target:  5'- uGCGUCGCgCCCGuCGUCggUCGGuuuACgGg -3'
miRNA:   3'- gCGCAGCG-GGGC-GUAG--AGUUuu-UGgC- -5'
14308 3' -53.8 NC_003521.1 + 217594 0.68 0.966307
Target:  5'- cCGgGUcCGCCCCggaccagcagggGCGUCUCGGccGCCa -3'
miRNA:   3'- -GCgCA-GCGGGG------------CGUAGAGUUuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 214533 0.67 0.983454
Target:  5'- gCGCGUgGCCCUGgCcuggcCUCG-AGACCGg -3'
miRNA:   3'- -GCGCAgCGGGGC-Gua---GAGUuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 214057 0.66 0.988325
Target:  5'- gCGCGUC-CCCauCGuCAUCUCuuAcACCGg -3'
miRNA:   3'- -GCGCAGcGGG--GC-GUAGAGuuUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 212864 0.68 0.956053
Target:  5'- aGCGcCGCCUgGCGUUUCu---ACCGc -3'
miRNA:   3'- gCGCaGCGGGgCGUAGAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 208150 0.66 0.990897
Target:  5'- aGCGUC-CCUCGUggCUCAGAcgguAACUGu -3'
miRNA:   3'- gCGCAGcGGGGCGuaGAGUUU----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 205683 0.66 0.985223
Target:  5'- gCGCGUggCGCaCCCGCG-CUCAGucGCgGc -3'
miRNA:   3'- -GCGCA--GCG-GGGCGUaGAGUUuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 205435 0.66 0.985223
Target:  5'- uCGCG-CGgCCCGCGUcCUC----GCCGa -3'
miRNA:   3'- -GCGCaGCgGGGCGUA-GAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 204049 0.66 0.986844
Target:  5'- gCGCGUgGCCCUGCcaGUCgccgCAGucgcACCa -3'
miRNA:   3'- -GCGCAgCGGGGCG--UAGa---GUUuu--UGGc -5'
14308 3' -53.8 NC_003521.1 + 202586 0.7 0.907505
Target:  5'- cCGCGucUCGCCCCGCccg-CcGAGGCCGc -3'
miRNA:   3'- -GCGC--AGCGGGGCGuagaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 196374 0.66 0.985223
Target:  5'- gGCGUUGUaCUCGCAUCgcc-GAGCCGc -3'
miRNA:   3'- gCGCAGCG-GGGCGUAGaguuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 195862 0.75 0.690766
Target:  5'- gCGCuGUCGCCUCGC-UCUCGGGAcuGCCc -3'
miRNA:   3'- -GCG-CAGCGGGGCGuAGAGUUUU--UGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.