miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 113588 0.67 0.967104
Target:  5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3'
miRNA:   3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5'
14308 5' -54.8 NC_003521.1 + 53152 0.67 0.967104
Target:  5'- cUUGAACcacgUCGGGGACGGcggcgaGGAgguCGGc -3'
miRNA:   3'- aAGCUUG----AGCCCCUGCC------CCUauuGCC- -5'
14308 5' -54.8 NC_003521.1 + 19093 0.67 0.971149
Target:  5'- --gGAGgagGGGGACGGGGAgggagacgacgcgggUGGCGGg -3'
miRNA:   3'- aagCUUgagCCCCUGCCCCU---------------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 101843 0.67 0.970032
Target:  5'- -gCGGGCUCcGGGuuGuGGAUGGCGGa -3'
miRNA:   3'- aaGCUUGAGcCCCugCcCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 37530 0.67 0.972768
Target:  5'- -aCGucCUgGGGGugggcaGCGGGGGUcGCGGc -3'
miRNA:   3'- aaGCuuGAgCCCC------UGCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 99167 0.68 0.938112
Target:  5'- gUCGAGCUCugcuucuccggccugGGGGcugaagguggcgGCGGaGGAUAcgGCGGg -3'
miRNA:   3'- aAGCUUGAG---------------CCCC------------UGCC-CCUAU--UGCC- -5'
14308 5' -54.8 NC_003521.1 + 151392 0.68 0.957122
Target:  5'- -cCGuuCUgCGGGGACGGGuaggGACGGc -3'
miRNA:   3'- aaGCuuGA-GCCCCUGCCCcua-UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 98219 0.68 0.949422
Target:  5'- -gCGGGCagcggcgUGGGaGGCGGGGA-GGCGGg -3'
miRNA:   3'- aaGCUUGa------GCCC-CUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 178830 0.68 0.949015
Target:  5'- -gUGAACUCGcucaggcGGcGCGGGGGcGACGGg -3'
miRNA:   3'- aaGCUUGAGC-------CCcUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 120956 0.68 0.953379
Target:  5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3'
miRNA:   3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5'
14308 5' -54.8 NC_003521.1 + 169200 0.68 0.945248
Target:  5'- -gUGGACgggCGGGGACGGaGGAgacAACa- -3'
miRNA:   3'- aaGCUUGa--GCCCCUGCC-CCUa--UUGcc -5'
14308 5' -54.8 NC_003521.1 + 94577 0.68 0.940855
Target:  5'- -gUGAACUgCGGGucaaagaccACGGGGGUGACGa -3'
miRNA:   3'- aaGCUUGA-GCCCc--------UGCCCCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 228441 0.68 0.936239
Target:  5'- -aCGAACUCGGcgugaaagaGGcCGGaGGGUAGCGa -3'
miRNA:   3'- aaGCUUGAGCC---------CCuGCC-CCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 168199 0.68 0.945248
Target:  5'- cUCGAcaGCUUGGGGgaucagACGGGaGAagucagugcgcUAGCGGg -3'
miRNA:   3'- aAGCU--UGAGCCCC------UGCCC-CU-----------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 164205 0.68 0.949422
Target:  5'- --gGAACggCGGGGcgGCGGuGGUAGCGGc -3'
miRNA:   3'- aagCUUGa-GCCCC--UGCCcCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 182599 0.68 0.940855
Target:  5'- -aCGggUuUCGGGaagaaGACGGGGAUaaucugggagGACGGg -3'
miRNA:   3'- aaGCuuG-AGCCC-----CUGCCCCUA----------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 100368 0.69 0.909809
Target:  5'- -gCGGACgggugaCGGGGAcggcacggaggcCGGGGAgaaGACGGg -3'
miRNA:   3'- aaGCUUGa-----GCCCCU------------GCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 43571 0.69 0.909809
Target:  5'- -cCGcuGACUgGgGGGACGGGGGcaaAACGGa -3'
miRNA:   3'- aaGC--UUGAgC-CCCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 35194 0.69 0.921052
Target:  5'- uUUCGGACcCaGGGACaGGGGGcgcGCGGg -3'
miRNA:   3'- -AAGCUUGaGcCCCUG-CCCCUau-UGCC- -5'
14308 5' -54.8 NC_003521.1 + 40889 0.69 0.924776
Target:  5'- --gGGAC-CGGGG-CGGGGGUcaguuuaauagcgaGGCGGg -3'
miRNA:   3'- aagCUUGaGCCCCuGCCCCUA--------------UUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.