Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 5' | -54.8 | NC_003521.1 | + | 217844 | 0.7 | 0.884689 |
Target: 5'- gUCGucuCUCGGGGGgGGGGGgggguuguuCGGu -3' miRNA: 3'- aAGCuu-GAGCCCCUgCCCCUauu------GCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 239450 | 0.7 | 0.884689 |
Target: 5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3' miRNA: 3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 98931 | 0.7 | 0.877877 |
Target: 5'- gUCGGAUcgCGGGaccgagcggaGACGGGuGGUGGCGGc -3' miRNA: 3'- aAGCUUGa-GCCC----------CUGCCC-CUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 238461 | 0.7 | 0.870859 |
Target: 5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3' miRNA: 3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 38233 | 0.7 | 0.870859 |
Target: 5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3' miRNA: 3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 90876 | 0.69 | 0.915542 |
Target: 5'- -cCGAG---GGGGACGGGGAggggGACGa -3' miRNA: 3'- aaGCUUgagCCCCUGCCCCUa---UUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 43571 | 0.69 | 0.909809 |
Target: 5'- -cCGcuGACUgGgGGGACGGGGGcaaAACGGa -3' miRNA: 3'- aaGC--UUGAgC-CCCUGCCCCUa--UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 152510 | 0.69 | 0.909809 |
Target: 5'- --aGGcCUCGGGGAUGGGGuccagGGCGc -3' miRNA: 3'- aagCUuGAGCCCCUGCCCCua---UUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 108111 | 0.69 | 0.915542 |
Target: 5'- --gGAACUUGGGcAUGGGGGcuACGGu -3' miRNA: 3'- aagCUUGAGCCCcUGCCCCUauUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 35194 | 0.69 | 0.921052 |
Target: 5'- uUUCGGACcCaGGGACaGGGGGcgcGCGGg -3' miRNA: 3'- -AAGCUUGaGcCCCUG-CCCCUau-UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 40889 | 0.69 | 0.924776 |
Target: 5'- --gGGAC-CGGGG-CGGGGGUcaguuuaauagcgaGGCGGg -3' miRNA: 3'- aagCUUGaGCCCCuGCCCCUA--------------UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 100368 | 0.69 | 0.909809 |
Target: 5'- -gCGGACgggugaCGGGGAcggcacggaggcCGGGGAgaaGACGGg -3' miRNA: 3'- aaGCUUGa-----GCCCCU------------GCCCCUa--UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 178830 | 0.68 | 0.949015 |
Target: 5'- -gUGAACUCGcucaggcGGcGCGGGGGcGACGGg -3' miRNA: 3'- aaGCUUGAGC-------CCcUGCCCCUaUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 169200 | 0.68 | 0.945248 |
Target: 5'- -gUGGACgggCGGGGACGGaGGAgacAACa- -3' miRNA: 3'- aaGCUUGa--GCCCCUGCC-CCUa--UUGcc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 120956 | 0.68 | 0.953379 |
Target: 5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3' miRNA: 3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 99167 | 0.68 | 0.938112 |
Target: 5'- gUCGAGCUCugcuucuccggccugGGGGcugaagguggcgGCGGaGGAUAcgGCGGg -3' miRNA: 3'- aAGCUUGAG---------------CCCC------------UGCC-CCUAU--UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 228441 | 0.68 | 0.936239 |
Target: 5'- -aCGAACUCGGcgugaaagaGGcCGGaGGGUAGCGa -3' miRNA: 3'- aaGCUUGAGCC---------CCuGCC-CCUAUUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 168199 | 0.68 | 0.945248 |
Target: 5'- cUCGAcaGCUUGGGGgaucagACGGGaGAagucagugcgcUAGCGGg -3' miRNA: 3'- aAGCU--UGAGCCCC------UGCCC-CU-----------AUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 182599 | 0.68 | 0.940855 |
Target: 5'- -aCGggUuUCGGGaagaaGACGGGGAUaaucugggagGACGGg -3' miRNA: 3'- aaGCuuG-AGCCC-----CUGCCCCUA----------UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 94577 | 0.68 | 0.940855 |
Target: 5'- -gUGAACUgCGGGucaaagaccACGGGGGUGACGa -3' miRNA: 3'- aaGCUUGA-GCCCc--------UGCCCCUAUUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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