miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 98931 0.7 0.877877
Target:  5'- gUCGGAUcgCGGGaccgagcggaGACGGGuGGUGGCGGc -3'
miRNA:   3'- aAGCUUGa-GCCC----------CUGCCC-CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 99167 0.68 0.938112
Target:  5'- gUCGAGCUCugcuucuccggccugGGGGcugaagguggcgGCGGaGGAUAcgGCGGg -3'
miRNA:   3'- aAGCUUGAG---------------CCCC------------UGCC-CCUAU--UGCC- -5'
14308 5' -54.8 NC_003521.1 + 100368 0.69 0.909809
Target:  5'- -gCGGACgggugaCGGGGAcggcacggaggcCGGGGAgaaGACGGg -3'
miRNA:   3'- aaGCUUGa-----GCCCCU------------GCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 101843 0.67 0.970032
Target:  5'- -gCGGGCUCcGGGuuGuGGAUGGCGGa -3'
miRNA:   3'- aaGCUUGAGcCCCugCcCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 102964 0.7 0.897052
Target:  5'- cUCGGGCgUCGGGGcucugGCGGGGcgGcccagccGCGGc -3'
miRNA:   3'- aAGCUUG-AGCCCC-----UGCCCCuaU-------UGCC- -5'
14308 5' -54.8 NC_003521.1 + 103530 0.73 0.7636
Target:  5'- -gCGAACUCGcucauGGAggcgugcgUGGGGAUGACGGg -3'
miRNA:   3'- aaGCUUGAGCc----CCU--------GCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 106105 0.66 0.983801
Target:  5'- --aGGcCUCGGGcACGGGcGUGGCGGc -3'
miRNA:   3'- aagCUuGAGCCCcUGCCCcUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 108111 0.69 0.915542
Target:  5'- --gGAACUUGGGcAUGGGGGcuACGGu -3'
miRNA:   3'- aagCUUGAGCCCcUGCCCCUauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 113362 0.66 0.979891
Target:  5'- -aCGGGC-CGGGGGCGaGGAgGAgGGu -3'
miRNA:   3'- aaGCUUGaGCCCCUGCcCCUaUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 113588 0.67 0.967104
Target:  5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3'
miRNA:   3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5'
14308 5' -54.8 NC_003521.1 + 115421 0.72 0.824732
Target:  5'- -cCGGACUCagcgccgcGGcGCGGGGGUGACGGu -3'
miRNA:   3'- aaGCUUGAGc-------CCcUGCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 120555 0.73 0.772726
Target:  5'- -gCGGuCcCGGGGGagcgccCGGGGAUAACGGa -3'
miRNA:   3'- aaGCUuGaGCCCCU------GCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 120956 0.68 0.953379
Target:  5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3'
miRNA:   3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5'
14308 5' -54.8 NC_003521.1 + 122751 0.72 0.781735
Target:  5'- -cCGAugGCUgacacCGGGcACGGGGAUGGCGGc -3'
miRNA:   3'- aaGCU--UGA-----GCCCcUGCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 123563 0.66 0.977691
Target:  5'- -cCGAcgaCGGcGGugGcGGGAUGGCGGc -3'
miRNA:   3'- aaGCUugaGCC-CCugC-CCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 132983 0.67 0.970032
Target:  5'- --gGGACgguaaCGGGGGacCGGGGuuggGACGGg -3'
miRNA:   3'- aagCUUGa----GCCCCU--GCCCCua--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 133206 0.66 0.985525
Target:  5'- -aCGAccGCggUCGGGGcGCGGGuucaggggcGAUGGCGGu -3'
miRNA:   3'- aaGCU--UG--AGCCCC-UGCCC---------CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 148302 0.66 0.983801
Target:  5'- -cUGAgGCUCGGGacuagcaaGCGGGGGUGaggugGCGGa -3'
miRNA:   3'- aaGCU-UGAGCCCc-------UGCCCCUAU-----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 148380 0.7 0.903855
Target:  5'- -cCGAGCggggugCGGGGAggcugGGGGGUGAgGGc -3'
miRNA:   3'- aaGCUUGa-----GCCCCUg----CCCCUAUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 148507 0.72 0.824732
Target:  5'- -gCGGAUgggaUCcGGGACGGGGGUGGgGGa -3'
miRNA:   3'- aaGCUUG----AGcCCCUGCCCCUAUUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.