Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 5' | -54.8 | NC_003521.1 | + | 166775 | 0.74 | 0.706839 |
Target: 5'- -gUGAGCUCGGGacaGGCGGGGucgGACGa -3' miRNA: 3'- aaGCUUGAGCCC---CUGCCCCua-UUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 164205 | 0.68 | 0.949422 |
Target: 5'- --gGAACggCGGGGcgGCGGuGGUAGCGGc -3' miRNA: 3'- aagCUUGa-GCCCC--UGCCcCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 156691 | 0.73 | 0.754364 |
Target: 5'- cUUCGcGCUCGGGGAaaaggugcuggcCGGGGAggAGCGc -3' miRNA: 3'- -AAGCuUGAGCCCCU------------GCCCCUa-UUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 152510 | 0.69 | 0.909809 |
Target: 5'- --aGGcCUCGGGGAUGGGGuccagGGCGc -3' miRNA: 3'- aagCUuGAGCCCCUGCCCCua---UUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 151392 | 0.68 | 0.957122 |
Target: 5'- -cCGuuCUgCGGGGACGGGuaggGACGGc -3' miRNA: 3'- aaGCuuGA-GCCCCUGCCCcua-UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 151105 | 0.7 | 0.870859 |
Target: 5'- gUCGGgccGCUgGGGGaugGCGGGGGgaaUAugGGg -3' miRNA: 3'- aAGCU---UGAgCCCC---UGCCCCU---AUugCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 150032 | 0.72 | 0.816431 |
Target: 5'- --gGGGCU-GGGGAgGGGGGUAAgGGc -3' miRNA: 3'- aagCUUGAgCCCCUgCCCCUAUUgCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 148653 | 0.67 | 0.960654 |
Target: 5'- -cCGAGCUCGG---CGGGGAUGGCc- -3' miRNA: 3'- aaGCUUGAGCCccuGCCCCUAUUGcc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 148507 | 0.72 | 0.824732 |
Target: 5'- -gCGGAUgggaUCcGGGACGGGGGUGGgGGa -3' miRNA: 3'- aaGCUUG----AGcCCCUGCCCCUAUUgCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 148380 | 0.7 | 0.903855 |
Target: 5'- -cCGAGCggggugCGGGGAggcugGGGGGUGAgGGc -3' miRNA: 3'- aaGCUUGa-----GCCCCUg----CCCCUAUUgCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 148302 | 0.66 | 0.983801 |
Target: 5'- -cUGAgGCUCGGGacuagcaaGCGGGGGUGaggugGCGGa -3' miRNA: 3'- aaGCU-UGAGCCCc-------UGCCCCUAU-----UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 133206 | 0.66 | 0.985525 |
Target: 5'- -aCGAccGCggUCGGGGcGCGGGuucaggggcGAUGGCGGu -3' miRNA: 3'- aaGCU--UG--AGCCCC-UGCCC---------CUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 132983 | 0.67 | 0.970032 |
Target: 5'- --gGGACgguaaCGGGGGacCGGGGuuggGACGGg -3' miRNA: 3'- aagCUUGa----GCCCCU--GCCCCua--UUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 123563 | 0.66 | 0.977691 |
Target: 5'- -cCGAcgaCGGcGGugGcGGGAUGGCGGc -3' miRNA: 3'- aaGCUugaGCC-CCugC-CCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 122751 | 0.72 | 0.781735 |
Target: 5'- -cCGAugGCUgacacCGGGcACGGGGAUGGCGGc -3' miRNA: 3'- aaGCU--UGA-----GCCCcUGCCCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 120956 | 0.68 | 0.953379 |
Target: 5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3' miRNA: 3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 120555 | 0.73 | 0.772726 |
Target: 5'- -gCGGuCcCGGGGGagcgccCGGGGAUAACGGa -3' miRNA: 3'- aaGCUuGaGCCCCU------GCCCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 115421 | 0.72 | 0.824732 |
Target: 5'- -cCGGACUCagcgccgcGGcGCGGGGGUGACGGu -3' miRNA: 3'- aaGCUUGAGc-------CCcUGCCCCUAUUGCC- -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 113588 | 0.67 | 0.967104 |
Target: 5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3' miRNA: 3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5' |
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14308 | 5' | -54.8 | NC_003521.1 | + | 113362 | 0.66 | 0.979891 |
Target: 5'- -aCGGGC-CGGGGGCGaGGAgGAgGGu -3' miRNA: 3'- aaGCUUGaGCCCCUGCcCCUaUUgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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