miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 239450 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 238461 0.7 0.870859
Target:  5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3'
miRNA:   3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 234826 0.67 0.96398
Target:  5'- -aCGAagACgacgaCGGGGACGGcGAUAGCGu -3'
miRNA:   3'- aaGCU--UGa----GCCCCUGCCcCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 228441 0.68 0.936239
Target:  5'- -aCGAACUCGGcgugaaagaGGcCGGaGGGUAGCGa -3'
miRNA:   3'- aaGCUUGAGCC---------CCuGCC-CCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 217844 0.7 0.884689
Target:  5'- gUCGucuCUCGGGGGgGGGGGgggguuguuCGGu -3'
miRNA:   3'- aAGCuu-GAGCCCCUgCCCCUauu------GCC- -5'
14308 5' -54.8 NC_003521.1 + 217638 0.66 0.981729
Target:  5'- cUCGGcguGgUCGGGGGgcauggcgggaucCGGGGGUuuccACGGg -3'
miRNA:   3'- aAGCU---UgAGCCCCU-------------GCCCCUAu---UGCC- -5'
14308 5' -54.8 NC_003521.1 + 212883 0.75 0.638035
Target:  5'- -gUGGACgCGGGcGACGGGGGUGuCGGu -3'
miRNA:   3'- aaGCUUGaGCCC-CUGCCCCUAUuGCC- -5'
14308 5' -54.8 NC_003521.1 + 209571 0.66 0.985525
Target:  5'- -aCGGuggCGGGGGucCGGGGGcgcacgUAGCGGa -3'
miRNA:   3'- aaGCUugaGCCCCU--GCCCCU------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 207662 0.66 0.977462
Target:  5'- aUCGGGa--GGGGGCaucgcgaGGGaGAUGACGGc -3'
miRNA:   3'- aAGCUUgagCCCCUG-------CCC-CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 198296 0.73 0.76084
Target:  5'- aUCGGGgugacuggaguuccCUgGGGGugGGGGAUgGGCGGc -3'
miRNA:   3'- aAGCUU--------------GAgCCCCugCCCCUA-UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 195836 0.66 0.982694
Target:  5'- aUCGAGCgagaucucgcgcggCaGGGuuCGGGGAUcGCGGu -3'
miRNA:   3'- aAGCUUGa-------------GcCCCu-GCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 193298 0.71 0.856227
Target:  5'- gUCGGAgUCGGcG-CGGGGGUggUGGg -3'
miRNA:   3'- aAGCUUgAGCCcCuGCCCCUAuuGCC- -5'
14308 5' -54.8 NC_003521.1 + 187888 0.66 0.977691
Target:  5'- cUCGGGCggcaCGGGcGGCGGGGGca--GGu -3'
miRNA:   3'- aAGCUUGa---GCCC-CUGCCCCUauugCC- -5'
14308 5' -54.8 NC_003521.1 + 182599 0.68 0.940855
Target:  5'- -aCGggUuUCGGGaagaaGACGGGGAUaaucugggagGACGGg -3'
miRNA:   3'- aaGCuuG-AGCCC-----CUGCCCCUA----------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 179728 0.66 0.985525
Target:  5'- aUCGuACUCGGGuuccuUGaGGGUGACGGg -3'
miRNA:   3'- aAGCuUGAGCCCcu---GCcCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 178830 0.68 0.949015
Target:  5'- -gUGAACUCGcucaggcGGcGCGGGGGcGACGGg -3'
miRNA:   3'- aaGCUUGAGC-------CCcUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 173652 0.66 0.977691
Target:  5'- gUUCGGGCggcugCGcGGGACccaGGGGu--ACGGa -3'
miRNA:   3'- -AAGCUUGa----GC-CCCUG---CCCCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 170520 0.67 0.967104
Target:  5'- -aUGAcgGCgugugaCGGGGACGGGGGgcagGAgGGu -3'
miRNA:   3'- aaGCU--UGa-----GCCCCUGCCCCUa---UUgCC- -5'
14308 5' -54.8 NC_003521.1 + 169200 0.68 0.945248
Target:  5'- -gUGGACgggCGGGGACGGaGGAgacAACa- -3'
miRNA:   3'- aaGCUUGa--GCCCCUGCC-CCUa--UUGcc -5'
14308 5' -54.8 NC_003521.1 + 168199 0.68 0.945248
Target:  5'- cUCGAcaGCUUGGGGgaucagACGGGaGAagucagugcgcUAGCGGg -3'
miRNA:   3'- aAGCU--UGAGCCCC------UGCCC-CU-----------AUUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.