miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 170520 0.67 0.967104
Target:  5'- -aUGAcgGCgugugaCGGGGACGGGGGgcagGAgGGu -3'
miRNA:   3'- aaGCU--UGa-----GCCCCUGCCCCUa---UUgCC- -5'
14308 5' -54.8 NC_003521.1 + 113588 0.67 0.967104
Target:  5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3'
miRNA:   3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5'
14308 5' -54.8 NC_003521.1 + 69732 0.67 0.96398
Target:  5'- -gCGGuaaCGGcGGGCGGGGAggcGGCGGu -3'
miRNA:   3'- aaGCUugaGCC-CCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 234826 0.67 0.96398
Target:  5'- -aCGAagACgacgaCGGGGACGGcGAUAGCGu -3'
miRNA:   3'- aaGCU--UGa----GCCCCUGCCcCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 148653 0.67 0.960654
Target:  5'- -cCGAGCUCGG---CGGGGAUGGCc- -3'
miRNA:   3'- aaGCUUGAGCCccuGCCCCUAUUGcc -5'
14308 5' -54.8 NC_003521.1 + 151392 0.68 0.957122
Target:  5'- -cCGuuCUgCGGGGACGGGuaggGACGGc -3'
miRNA:   3'- aaGCuuGA-GCCCCUGCCCcua-UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 120956 0.68 0.953379
Target:  5'- --gGGGCa-GGGGGCGGGGcgGuuuGCGGu -3'
miRNA:   3'- aagCUUGagCCCCUGCCCCuaU---UGCC- -5'
14308 5' -54.8 NC_003521.1 + 164205 0.68 0.949422
Target:  5'- --gGAACggCGGGGcgGCGGuGGUAGCGGc -3'
miRNA:   3'- aagCUUGa-GCCCC--UGCCcCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 98219 0.68 0.949422
Target:  5'- -gCGGGCagcggcgUGGGaGGCGGGGA-GGCGGg -3'
miRNA:   3'- aaGCUUGa------GCCC-CUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 178830 0.68 0.949015
Target:  5'- -gUGAACUCGcucaggcGGcGCGGGGGcGACGGg -3'
miRNA:   3'- aaGCUUGAGC-------CCcUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 169200 0.68 0.945248
Target:  5'- -gUGGACgggCGGGGACGGaGGAgacAACa- -3'
miRNA:   3'- aaGCUUGa--GCCCCUGCC-CCUa--UUGcc -5'
14308 5' -54.8 NC_003521.1 + 168199 0.68 0.945248
Target:  5'- cUCGAcaGCUUGGGGgaucagACGGGaGAagucagugcgcUAGCGGg -3'
miRNA:   3'- aAGCU--UGAGCCCC------UGCCC-CU-----------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 182599 0.68 0.940855
Target:  5'- -aCGggUuUCGGGaagaaGACGGGGAUaaucugggagGACGGg -3'
miRNA:   3'- aaGCuuG-AGCCC-----CUGCCCCUA----------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 94577 0.68 0.940855
Target:  5'- -gUGAACUgCGGGucaaagaccACGGGGGUGACGa -3'
miRNA:   3'- aaGCUUGA-GCCCc--------UGCCCCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 99167 0.68 0.938112
Target:  5'- gUCGAGCUCugcuucuccggccugGGGGcugaagguggcgGCGGaGGAUAcgGCGGg -3'
miRNA:   3'- aAGCUUGAG---------------CCCC------------UGCC-CCUAU--UGCC- -5'
14308 5' -54.8 NC_003521.1 + 228441 0.68 0.936239
Target:  5'- -aCGAACUCGGcgugaaagaGGcCGGaGGGUAGCGa -3'
miRNA:   3'- aaGCUUGAGCC---------CCuGCC-CCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 40889 0.69 0.924776
Target:  5'- --gGGAC-CGGGG-CGGGGGUcaguuuaauagcgaGGCGGg -3'
miRNA:   3'- aagCUUGaGCCCCuGCCCCUA--------------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 35194 0.69 0.921052
Target:  5'- uUUCGGACcCaGGGACaGGGGGcgcGCGGg -3'
miRNA:   3'- -AAGCUUGaGcCCCUG-CCCCUau-UGCC- -5'
14308 5' -54.8 NC_003521.1 + 108111 0.69 0.915542
Target:  5'- --gGAACUUGGGcAUGGGGGcuACGGu -3'
miRNA:   3'- aagCUUGAGCCCcUGCCCCUauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 90876 0.69 0.915542
Target:  5'- -cCGAG---GGGGACGGGGAggggGACGa -3'
miRNA:   3'- aaGCUUgagCCCCUGCCCCUa---UUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.