miRNA display CGI


Results 21 - 40 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 56598 0.66 0.989476
Target:  5'- -gUGGUugAugacGCGUAugGCCGCCa-- -3'
miRNA:   3'- agACCAugUu---UGCGUugCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 43162 0.66 0.989476
Target:  5'- gCUGGUG---GCGCugcugccgcacgAGCGCCACC-GCg -3'
miRNA:   3'- aGACCAUguuUGCG------------UUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 104615 0.66 0.990366
Target:  5'- gUCUGGUggACAuggacugcgagaagAGCGCcuucaugcucGACGCCGCCGc- -3'
miRNA:   3'- -AGACCA--UGU--------------UUGCG----------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 70012 0.66 0.991863
Target:  5'- -----aGCGAGCGCAGCGgUACCaGGUa -3'
miRNA:   3'- agaccaUGUUUGCGUUGCgGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 70696 0.66 0.99073
Target:  5'- gUCUGcGccGCAAGCuGCGucgGCGCCugcgccggauguACCGGCa -3'
miRNA:   3'- -AGAC-Ca-UGUUUG-CGU---UGCGG------------UGGCCG- -5'
14309 5' -53 NC_003521.1 + 232384 0.66 0.991863
Target:  5'- --aGGUcCAccgucucGCGCuggcuGCGCCugCGGCa -3'
miRNA:   3'- agaCCAuGUu------UGCGu----UGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 180140 0.66 0.992884
Target:  5'- --aGGUcCAGGaGCAGCGCCACCu-- -3'
miRNA:   3'- agaCCAuGUUUgCGUUGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 172769 0.66 0.99073
Target:  5'- uUCUGGcUGCcaccggGGGCGCcgcggaccACGCCGCCcguGGCg -3'
miRNA:   3'- -AGACC-AUG------UUUGCGu-------UGCGGUGG---CCG- -5'
14309 5' -53 NC_003521.1 + 172134 0.66 0.989476
Target:  5'- cUCUGGUugGuggagaaaauGCGCAGCaUCACCuGCu -3'
miRNA:   3'- -AGACCAugUu---------UGCGUUGcGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 155134 0.66 0.994618
Target:  5'- cCUGGa--GAACcuGCGGCGCgugcuggaCGCCGGCu -3'
miRNA:   3'- aGACCaugUUUG--CGUUGCG--------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 162833 0.66 0.99073
Target:  5'- cUCUGcgcgaccaucGUGCAGAacgGCGAgccCGCgGCCGGCu -3'
miRNA:   3'- -AGAC----------CAUGUUUg--CGUU---GCGgUGGCCG- -5'
14309 5' -53 NC_003521.1 + 32376 0.66 0.992884
Target:  5'- uUUUGGUG---GCGCGugGCCAgguccuCgGGCg -3'
miRNA:   3'- -AGACCAUguuUGCGUugCGGU------GgCCG- -5'
14309 5' -53 NC_003521.1 + 112811 0.66 0.991863
Target:  5'- cUCUGGgACGGcCGCGACcCC-CCGGa -3'
miRNA:   3'- -AGACCaUGUUuGCGUUGcGGuGGCCg -5'
14309 5' -53 NC_003521.1 + 32133 0.66 0.992884
Target:  5'- --aGGUaGCGGGCGCggUGCaccaAgCGGCg -3'
miRNA:   3'- agaCCA-UGUUUGCGuuGCGg---UgGCCG- -5'
14309 5' -53 NC_003521.1 + 210950 0.66 0.99073
Target:  5'- --aGGUGCAA---CAGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAUGUUugcGUUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 129938 0.66 0.99073
Target:  5'- cCUGGccgagAC-GGCGCAGuucUGCCGCgGGCc -3'
miRNA:   3'- aGACCa----UGuUUGCGUU---GCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 36512 0.66 0.989343
Target:  5'- aCUGGaGCAAcauCGUGACGCCcaaaucguccagcGCCGaGCu -3'
miRNA:   3'- aGACCaUGUUu--GCGUUGCGG-------------UGGC-CG- -5'
14309 5' -53 NC_003521.1 + 77617 0.66 0.991863
Target:  5'- --gGGcGCGccCGUGACGgCGCCGGCc -3'
miRNA:   3'- agaCCaUGUuuGCGUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 67722 0.66 0.989075
Target:  5'- gCUGGUGCAAGUGCucuucaagaucuucuCGCaacaguGCCGGCu -3'
miRNA:   3'- aGACCAUGUUUGCGuu-------------GCGg-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 201240 0.66 0.992786
Target:  5'- --cGGcuucUACGcGCGCAucACGCCgcgcagccagaugGCCGGCg -3'
miRNA:   3'- agaCC----AUGUuUGCGU--UGCGG-------------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.