miRNA display CGI


Results 21 - 40 of 560 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 225537 0.66 0.994618
Target:  5'- gUCg---ACGAACGCu-CGUCACCaGGCa -3'
miRNA:   3'- -AGaccaUGUUUGCGuuGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 224729 0.67 0.982903
Target:  5'- -gUGGUGCucgccGACGCAgGCgGCCAgcgcgucggggcuCCGGCa -3'
miRNA:   3'- agACCAUGu----UUGCGU-UG-CGGU-------------GGCCG- -5'
14309 5' -53 NC_003521.1 + 224666 0.66 0.992786
Target:  5'- gUUGGUcaGCAGcuucagcgucuugGCGUGGCGCC-CgGGCg -3'
miRNA:   3'- aGACCA--UGUU-------------UGCGUUGCGGuGgCCG- -5'
14309 5' -53 NC_003521.1 + 223684 0.66 0.993799
Target:  5'- --gGGU-CGGGCGaAGCG-CGCCGGCa -3'
miRNA:   3'- agaCCAuGUUUGCgUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 223370 0.66 0.994618
Target:  5'- cUUGGUcagcaGCGAcauCGCGGCGCCccgacGCgGGCc -3'
miRNA:   3'- aGACCA-----UGUUu--GCGUUGCGG-----UGgCCG- -5'
14309 5' -53 NC_003521.1 + 223279 0.68 0.970326
Target:  5'- --cGGUgACGAugcguucGCGCAacuggcugaaucccGCGCCGCCGGg -3'
miRNA:   3'- agaCCA-UGUU-------UGCGU--------------UGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 222497 0.7 0.932926
Target:  5'- aCUGGUcCAAcaGCAccACGCCGCUGGg -3'
miRNA:   3'- aGACCAuGUUugCGU--UGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 221895 0.71 0.911144
Target:  5'- -gUGGgGCGGauugccggcGCGCGGCGCCACCcuucggGGCu -3'
miRNA:   3'- agACCaUGUU---------UGCGUUGCGGUGG------CCG- -5'
14309 5' -53 NC_003521.1 + 221699 0.73 0.841051
Target:  5'- aCUGGUACAccGGCGgccCGCCACCcGCg -3'
miRNA:   3'- aGACCAUGU--UUGCguuGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 220526 0.74 0.78979
Target:  5'- cCUGGUGC---UGCAugG-CGCCGGCg -3'
miRNA:   3'- aGACCAUGuuuGCGUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 218609 0.67 0.986414
Target:  5'- --aGGUACGGuucggccgccagcGCGCGGCgguaagcgGCCacgGCCGGCg -3'
miRNA:   3'- agaCCAUGUU-------------UGCGUUG--------CGG---UGGCCG- -5'
14309 5' -53 NC_003521.1 + 218333 0.68 0.970612
Target:  5'- gCUGGU-CAuGACGCugaaaccuugcgauAGCGCCACCcGCu -3'
miRNA:   3'- aGACCAuGU-UUGCG--------------UUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 216971 0.66 0.994618
Target:  5'- uUCUcGUAgAGACaCAGCGCCAgcaggUCGGCc -3'
miRNA:   3'- -AGAcCAUgUUUGcGUUGCGGU-----GGCCG- -5'
14309 5' -53 NC_003521.1 + 216628 0.66 0.993799
Target:  5'- --cGGUagGCGGGCGCGcCGaCGCCGGg -3'
miRNA:   3'- agaCCA--UGUUUGCGUuGCgGUGGCCg -5'
14309 5' -53 NC_003521.1 + 216614 0.67 0.984736
Target:  5'- gCUGGUGCugcuguuGGACGaCGuuccgcccAUGCCGCCcGGCu -3'
miRNA:   3'- aGACCAUG-------UUUGC-GU--------UGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 216114 0.7 0.922501
Target:  5'- aCUGGUugA-GCGCGGCGCgGaggccgCGGCa -3'
miRNA:   3'- aGACCAugUuUGCGUUGCGgUg-----GCCG- -5'
14309 5' -53 NC_003521.1 + 215559 0.66 0.992884
Target:  5'- aCUGGUACAccaggccaggGAcCGCGcCGUCaACCGGg -3'
miRNA:   3'- aGACCAUGU----------UU-GCGUuGCGG-UGGCCg -5'
14309 5' -53 NC_003521.1 + 215271 0.7 0.92783
Target:  5'- gCUGGaagggcgagaUGCAGAgGCAGgccacCGCCAgCGGCg -3'
miRNA:   3'- aGACC----------AUGUUUgCGUU-----GCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 215197 0.69 0.954945
Target:  5'- -gUGGUcacGCGccaGCAGCGCCAgcCCGGUg -3'
miRNA:   3'- agACCA---UGUuugCGUUGCGGU--GGCCG- -5'
14309 5' -53 NC_003521.1 + 214517 0.7 0.942421
Target:  5'- cCUGGaagcGCGgacAGCGCGugGCC-CUGGCc -3'
miRNA:   3'- aGACCa---UGU---UUGCGUugCGGuGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.