miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 3' -50.2 NC_003521.1 + 124533 0.66 0.999252
Target:  5'- gAGCUGUCCUCcagCGCCagcuugcgcacguACGucacGAUCAg -3'
miRNA:   3'- aUUGACAGGAGua-GUGG-------------UGCu---CUAGU- -5'
14311 3' -50.2 NC_003521.1 + 161414 0.66 0.999237
Target:  5'- aGACUGgccguguUCC-CAUCauguuuuACCGCGAGAUUAa -3'
miRNA:   3'- aUUGAC-------AGGaGUAG-------UGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 78404 0.66 0.999103
Target:  5'- aGACgucggCCUCG-C-CCACGGGAUCAc -3'
miRNA:   3'- aUUGaca--GGAGUaGuGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 137488 0.66 0.999103
Target:  5'- cGGCgUGUCg-CggCGCCGCGAGGUCu -3'
miRNA:   3'- aUUG-ACAGgaGuaGUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 63558 0.66 0.999103
Target:  5'- gAGCcGcCCUCGUCACCugGguGGAUgAg -3'
miRNA:   3'- aUUGaCaGGAGUAGUGGugC--UCUAgU- -5'
14311 3' -50.2 NC_003521.1 + 148757 0.66 0.999103
Target:  5'- cGACccccgGUCCgcCAUCGCUACGGGAggCAc -3'
miRNA:   3'- aUUGa----CAGGa-GUAGUGGUGCUCUa-GU- -5'
14311 3' -50.2 NC_003521.1 + 226850 0.66 0.998909
Target:  5'- ----cGUCCUCGUCGuagUCACGGGcgCGg -3'
miRNA:   3'- auugaCAGGAGUAGU---GGUGCUCuaGU- -5'
14311 3' -50.2 NC_003521.1 + 157215 0.66 0.998909
Target:  5'- cGACUccaGUCCcgccgUCAUacgcCGCCGCGAGGUCc -3'
miRNA:   3'- aUUGA---CAGG-----AGUA----GUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 150789 0.66 0.998679
Target:  5'- gAGCUGgaggCC--GUCuACCGCGAGAUCc -3'
miRNA:   3'- aUUGACa---GGagUAG-UGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 42677 0.66 0.99841
Target:  5'- cGACUcaGUCCUCAgaGCCGcCGAGAUg- -3'
miRNA:   3'- aUUGA--CAGGAGUagUGGU-GCUCUAgu -5'
14311 3' -50.2 NC_003521.1 + 173552 0.67 0.998096
Target:  5'- cGGCUGUCCUCccugCccgcccuccuGCCACG-GGUCGa -3'
miRNA:   3'- aUUGACAGGAGua--G----------UGGUGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 72871 0.67 0.998096
Target:  5'- cGGCgGUCgUCGUCACCGCaGGcUCAc -3'
miRNA:   3'- aUUGaCAGgAGUAGUGGUGcUCuAGU- -5'
14311 3' -50.2 NC_003521.1 + 184517 0.67 0.997731
Target:  5'- ----gGUCUUCAUcCAUCACGuGGUCAa -3'
miRNA:   3'- auugaCAGGAGUA-GUGGUGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 111593 0.67 0.997731
Target:  5'- gGACUGcgugguagucuUCCUC-UCGCCccgcggcgACGAGGUCGa -3'
miRNA:   3'- aUUGAC-----------AGGAGuAGUGG--------UGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 165617 0.67 0.997731
Target:  5'- aGGCUGUCCgug-CACCACGGuGAaCAc -3'
miRNA:   3'- aUUGACAGGaguaGUGGUGCU-CUaGU- -5'
14311 3' -50.2 NC_003521.1 + 222769 0.67 0.997218
Target:  5'- aUAACagGUCCUCGUCccaccauuccccCCACGGGAUa- -3'
miRNA:   3'- -AUUGa-CAGGAGUAGu-----------GGUGCUCUAgu -5'
14311 3' -50.2 NC_003521.1 + 99236 0.67 0.996502
Target:  5'- gGGCUGUagcugacggugcgcgCgUCGUCGCgCGCGAGGUCc -3'
miRNA:   3'- aUUGACA---------------GgAGUAGUG-GUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 63611 0.67 0.996271
Target:  5'- cAGCUGUCCgaccugCAgcgcCGCCugGAGAa-- -3'
miRNA:   3'- aUUGACAGGa-----GUa---GUGGugCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 148872 0.67 0.996271
Target:  5'- ----cGcCCUCGcCGCCACGGGGUCc -3'
miRNA:   3'- auugaCaGGAGUaGUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 172904 0.68 0.994924
Target:  5'- gAGCUGUCCUCGUCcuuCUggGAGGa-- -3'
miRNA:   3'- aUUGACAGGAGUAGu--GGugCUCUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.