miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 3' -50.2 NC_003521.1 + 226850 0.66 0.998909
Target:  5'- ----cGUCCUCGUCGuagUCACGGGcgCGg -3'
miRNA:   3'- auugaCAGGAGUAGU---GGUGCUCuaGU- -5'
14311 3' -50.2 NC_003521.1 + 226559 0.69 0.986851
Target:  5'- -cGCUGUCgUCAcgaucgCGCCGCG-GAUCGg -3'
miRNA:   3'- auUGACAGgAGUa-----GUGGUGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 223866 0.71 0.971307
Target:  5'- cGGCUGUcCCUCGggUACCACGuuGUCGg -3'
miRNA:   3'- aUUGACA-GGAGUa-GUGGUGCucUAGU- -5'
14311 3' -50.2 NC_003521.1 + 222769 0.67 0.997218
Target:  5'- aUAACagGUCCUCGUCccaccauuccccCCACGGGAUa- -3'
miRNA:   3'- -AUUGa-CAGGAGUAGu-----------GGUGCUCUAgu -5'
14311 3' -50.2 NC_003521.1 + 211427 0.71 0.95762
Target:  5'- gGACUGUCCUCGUCgucguccuccucgGCCuCGcGGUCGg -3'
miRNA:   3'- aUUGACAGGAGUAG-------------UGGuGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 197238 0.69 0.986851
Target:  5'- ----cGUCCUCGUCGCCGCccGAGGa-- -3'
miRNA:   3'- auugaCAGGAGUAGUGGUG--CUCUagu -5'
14311 3' -50.2 NC_003521.1 + 194881 0.68 0.992188
Target:  5'- -cACgGcCCUCuUCgACCGCGAGAUCGc -3'
miRNA:   3'- auUGaCaGGAGuAG-UGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 184517 0.67 0.997731
Target:  5'- ----gGUCUUCAUcCAUCACGuGGUCAa -3'
miRNA:   3'- auugaCAGGAGUA-GUGGUGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 173552 0.67 0.998096
Target:  5'- cGGCUGUCCUCccugCccgcccuccuGCCACG-GGUCGa -3'
miRNA:   3'- aUUGACAGGAGua--G----------UGGUGCuCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 172904 0.68 0.994924
Target:  5'- gAGCUGUCCUCGUCcuuCUggGAGGa-- -3'
miRNA:   3'- aUUGACAGGAGUAGu--GGugCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 165617 0.67 0.997731
Target:  5'- aGGCUGUCCgug-CACCACGGuGAaCAc -3'
miRNA:   3'- aUUGACAGGaguaGUGGUGCU-CUaGU- -5'
14311 3' -50.2 NC_003521.1 + 161414 0.66 0.999237
Target:  5'- aGACUGgccguguUCC-CAUCauguuuuACCGCGAGAUUAa -3'
miRNA:   3'- aUUGAC-------AGGaGUAG-------UGGUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 157215 0.66 0.998909
Target:  5'- cGACUccaGUCCcgccgUCAUacgcCGCCGCGAGGUCc -3'
miRNA:   3'- aUUGA---CAGG-----AGUA----GUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 157144 0.7 0.983302
Target:  5'- ----cGUCCacaaCGUCACgCGCGAGGUCAa -3'
miRNA:   3'- auugaCAGGa---GUAGUG-GUGCUCUAGU- -5'
14311 3' -50.2 NC_003521.1 + 152857 0.69 0.991052
Target:  5'- ----aGUCCUCG-CGCCGCGAGGc-- -3'
miRNA:   3'- auugaCAGGAGUaGUGGUGCUCUagu -5'
14311 3' -50.2 NC_003521.1 + 150789 0.66 0.998679
Target:  5'- gAGCUGgaggCC--GUCuACCGCGAGAUCc -3'
miRNA:   3'- aUUGACa---GGagUAG-UGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 148872 0.67 0.996271
Target:  5'- ----cGcCCUCGcCGCCACGGGGUCc -3'
miRNA:   3'- auugaCaGGAGUaGUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 148757 0.66 0.999103
Target:  5'- cGACccccgGUCCgcCAUCGCUACGGGAggCAc -3'
miRNA:   3'- aUUGa----CAGGa-GUAGUGGUGCUCUa-GU- -5'
14311 3' -50.2 NC_003521.1 + 137488 0.66 0.999103
Target:  5'- cGGCgUGUCg-CggCGCCGCGAGGUCu -3'
miRNA:   3'- aUUG-ACAGgaGuaGUGGUGCUCUAGu -5'
14311 3' -50.2 NC_003521.1 + 129204 0.7 0.983302
Target:  5'- cGGCgGUucgaCCUCGUCGCCGCGGGG-CGa -3'
miRNA:   3'- aUUGaCA----GGAGUAGUGGUGCUCUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.