miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 25851 1.08 0.005969
Target:  5'- gGACACGGAGACGCGAACCACGCUGUGa -3'
miRNA:   3'- -CUGUGCCUCUGCGCUUGGUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 13907 0.8 0.340915
Target:  5'- cGGCGCGGAGGgggcCGCGGagGCCGCGCUGg- -3'
miRNA:   3'- -CUGUGCCUCU----GCGCU--UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 107434 0.75 0.588758
Target:  5'- cGACGCGaaaGCGCGGaccGCCGCGCUGUGc -3'
miRNA:   3'- -CUGUGCcucUGCGCU---UGGUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 164264 0.74 0.638374
Target:  5'- uGC-CGGAGGCGCGGACCGcCGCUc-- -3'
miRNA:   3'- cUGuGCCUCUGCGCUUGGU-GCGAcac -5'
14326 5' -55.5 NC_003521.1 + 19117 0.74 0.648312
Target:  5'- cGACGCGG-GugGCGGGCCGcCGgUGUa -3'
miRNA:   3'- -CUGUGCCuCugCGCUUGGU-GCgACAc -5'
14326 5' -55.5 NC_003521.1 + 189104 0.74 0.658238
Target:  5'- cGAguCGGAcGACGaggaGACCACGCUGUGg -3'
miRNA:   3'- -CUguGCCU-CUGCgc--UUGGUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 150785 0.73 0.678022
Target:  5'- cGACgACGGgcGGGCGCGAGCCgccaggggGCGCUGg- -3'
miRNA:   3'- -CUG-UGCC--UCUGCGCUUGG--------UGCGACac -5'
14326 5' -55.5 NC_003521.1 + 57109 0.72 0.744774
Target:  5'- aGACACGaGGGACGCGAGggggaauCCGCGgUGg- -3'
miRNA:   3'- -CUGUGC-CUCUGCGCUU-------GGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 57693 0.72 0.755078
Target:  5'- uGCACGGGGAUGCGA-CCGcCGCaaccggGUGa -3'
miRNA:   3'- cUGUGCCUCUGCGCUuGGU-GCGa-----CAC- -5'
14326 5' -55.5 NC_003521.1 + 109824 0.72 0.764338
Target:  5'- cGGCACGGAGAUG---GCCACGUcGUGa -3'
miRNA:   3'- -CUGUGCCUCUGCgcuUGGUGCGaCAC- -5'
14326 5' -55.5 NC_003521.1 + 214822 0.72 0.764338
Target:  5'- gGGCGCGGcGACgGCGGuuCCAUGCUGUu -3'
miRNA:   3'- -CUGUGCCuCUG-CGCUu-GGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 104086 0.72 0.773487
Target:  5'- gGGCGCGGcaGGACGCGGAaggcggCGCGCUGc- -3'
miRNA:   3'- -CUGUGCC--UCUGCGCUUg-----GUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 59039 0.72 0.773487
Target:  5'- cGCACGaGGAuCGCGAcuACCggGCGCUGUGg -3'
miRNA:   3'- cUGUGCcUCU-GCGCU--UGG--UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 120354 0.71 0.782517
Target:  5'- --gGCGGAGACaccuGCGGACguCGCUGUa -3'
miRNA:   3'- cugUGCCUCUG----CGCUUGguGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 119452 0.71 0.800187
Target:  5'- cGCgAUGGAGGCGCGAcagugugaaGCCGCGCggggcGUGc -3'
miRNA:   3'- cUG-UGCCUCUGCGCU---------UGGUGCGa----CAC- -5'
14326 5' -55.5 NC_003521.1 + 159841 0.71 0.80881
Target:  5'- uGCGCGGAGGCGCGAGCguaACgGUUGc- -3'
miRNA:   3'- cUGUGCCUCUGCGCUUGg--UG-CGACac -5'
14326 5' -55.5 NC_003521.1 + 31026 0.7 0.823119
Target:  5'- gGACGCguucguggugguggGGGGugGgaGGACCACGCUGUu -3'
miRNA:   3'- -CUGUG--------------CCUCugCg-CUUGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 114960 0.7 0.825596
Target:  5'- cGACACGGA--CGCGGccACCaagGCGCUGUa -3'
miRNA:   3'- -CUGUGCCUcuGCGCU--UGG---UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 97824 0.7 0.825596
Target:  5'- uGACGCGGAcGGCGCGA-CCGC-CgGUGc -3'
miRNA:   3'- -CUGUGCCU-CUGCGCUuGGUGcGaCAC- -5'
14326 5' -55.5 NC_003521.1 + 114774 0.7 0.833744
Target:  5'- gGACACGGAGACcaucuCCAUGCUGa- -3'
miRNA:   3'- -CUGUGCCUCUGcgcuuGGUGCGACac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.