miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 202734 0.67 0.941613
Target:  5'- uGACGCGGcagGGGCGCGGggACCcCG-UGUGg -3'
miRNA:   3'- -CUGUGCC---UCUGCGCU--UGGuGCgACAC- -5'
14326 5' -55.5 NC_003521.1 + 217303 0.69 0.892181
Target:  5'- cGACA-GG-GugGUG-ACCACGCUGUa -3'
miRNA:   3'- -CUGUgCCuCugCGCuUGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 201580 0.68 0.91067
Target:  5'- cGGCugGGGcuGAacgccCGCGGGCCAcCGCUGUc -3'
miRNA:   3'- -CUGugCCU--CU-----GCGCUUGGU-GCGACAc -5'
14326 5' -55.5 NC_003521.1 + 174503 0.68 0.921886
Target:  5'- gGACuGCaGGGcCGCGAugGCCGCGCUGg- -3'
miRNA:   3'- -CUG-UGcCUCuGCGCU--UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 71275 0.68 0.927155
Target:  5'- --gGCGGAGGCGgGGGCCGCGg---- -3'
miRNA:   3'- cugUGCCUCUGCgCUUGGUGCgacac -5'
14326 5' -55.5 NC_003521.1 + 103882 0.68 0.927155
Target:  5'- cGACAgGGGGAUGgGcuGCCGCGCgGUc -3'
miRNA:   3'- -CUGUgCCUCUGCgCu-UGGUGCGaCAc -5'
14326 5' -55.5 NC_003521.1 + 227862 0.67 0.936547
Target:  5'- aGACugGGAuucaugaggucccGACGCGGGauGCGCUGUu -3'
miRNA:   3'- -CUGugCCU-------------CUGCGCUUggUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 213610 0.67 0.937019
Target:  5'- aGGCuguUGGGGugGCGGucGCCGCGCa--- -3'
miRNA:   3'- -CUGu--GCCUCugCGCU--UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 37410 0.67 0.938883
Target:  5'- uACACGGGccugaccguguGGCGCGGcGCCgagccucugaaggugACGCUGUGg -3'
miRNA:   3'- cUGUGCCU-----------CUGCGCU-UGG---------------UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 100696 0.69 0.892181
Target:  5'- uGAUGCGGAGGCGCc-GCCGCggccGCUGaUGg -3'
miRNA:   3'- -CUGUGCCUCUGCGcuUGGUG----CGAC-AC- -5'
14326 5' -55.5 NC_003521.1 + 192048 0.69 0.871758
Target:  5'- uGCGCGGcAGACGCGGcguCCGCGgcgguUUGUGa -3'
miRNA:   3'- cUGUGCC-UCUGCGCUu--GGUGC-----GACAC- -5'
14326 5' -55.5 NC_003521.1 + 172779 0.69 0.871758
Target:  5'- cAC-CGGGGGCgccGCGGACCACGCcgcccGUGg -3'
miRNA:   3'- cUGuGCCUCUG---CGCUUGGUGCGa----CAC- -5'
14326 5' -55.5 NC_003521.1 + 164264 0.74 0.638374
Target:  5'- uGC-CGGAGGCGCGGACCGcCGCUc-- -3'
miRNA:   3'- cUGuGCCUCUGCGCUUGGU-GCGAcac -5'
14326 5' -55.5 NC_003521.1 + 57693 0.72 0.755078
Target:  5'- uGCACGGGGAUGCGA-CCGcCGCaaccggGUGa -3'
miRNA:   3'- cUGUGCCUCUGCGCUuGGU-GCGa-----CAC- -5'
14326 5' -55.5 NC_003521.1 + 214822 0.72 0.764338
Target:  5'- gGGCGCGGcGACgGCGGuuCCAUGCUGUu -3'
miRNA:   3'- -CUGUGCCuCUG-CGCUu-GGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 119452 0.71 0.800187
Target:  5'- cGCgAUGGAGGCGCGAcagugugaaGCCGCGCggggcGUGc -3'
miRNA:   3'- cUG-UGCCUCUGCGCU---------UGGUGCGa----CAC- -5'
14326 5' -55.5 NC_003521.1 + 159841 0.71 0.80881
Target:  5'- uGCGCGGAGGCGCGAGCguaACgGUUGc- -3'
miRNA:   3'- cUGUGCCUCUGCGCUUGg--UG-CGACac -5'
14326 5' -55.5 NC_003521.1 + 31026 0.7 0.823119
Target:  5'- gGACGCguucguggugguggGGGGugGgaGGACCACGCUGUu -3'
miRNA:   3'- -CUGUG--------------CCUCugCg-CUUGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 35392 0.7 0.841719
Target:  5'- --gGCGaGGACGCGGGCCGCGCg--- -3'
miRNA:   3'- cugUGCcUCUGCGCUUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 216126 0.7 0.849514
Target:  5'- cGGCGCGGAGGcCGCGGcagaggaagGCCAC-CUGg- -3'
miRNA:   3'- -CUGUGCCUCU-GCGCU---------UGGUGcGACac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.