miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 1352 0.68 0.927155
Target:  5'- cGGCugGGGcugaacgcGcCGCGGGCCAcCGCUGUc -3'
miRNA:   3'- -CUGugCCU--------CuGCGCUUGGU-GCGACAc -5'
14326 5' -55.5 NC_003521.1 + 8028 0.66 0.961291
Target:  5'- aGACcgcCGGAGGCGUugaGAACCAgcUGCUGa- -3'
miRNA:   3'- -CUGu--GCCUCUGCG---CUUGGU--GCGACac -5'
14326 5' -55.5 NC_003521.1 + 13856 0.67 0.950135
Target:  5'- cGGCGCGGGGGucucUGCGGGCgGCGCc--- -3'
miRNA:   3'- -CUGUGCCUCU----GCGCUUGgUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 13907 0.8 0.340915
Target:  5'- cGGCGCGGAGGgggcCGCGGagGCCGCGCUGg- -3'
miRNA:   3'- -CUGUGCCUCU----GCGCU--UGGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 13990 0.69 0.898564
Target:  5'- cGGCGCGGcggcGGGCGaGGACCccaugGCGCUGUa -3'
miRNA:   3'- -CUGUGCC----UCUGCgCUUGG-----UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 14489 0.66 0.961291
Target:  5'- -cCGCGGGGcGCGCGcACCAUGCa--- -3'
miRNA:   3'- cuGUGCCUC-UGCGCuUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 15055 0.67 0.957785
Target:  5'- cGGCGC-GAG-CGCGAGCgGCGC-GUGc -3'
miRNA:   3'- -CUGUGcCUCuGCGCUUGgUGCGaCAC- -5'
14326 5' -55.5 NC_003521.1 + 18220 0.7 0.849514
Target:  5'- -cCGCGGAGuucCGCGAGCUGCGCg--- -3'
miRNA:   3'- cuGUGCCUCu--GCGCUUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 19117 0.74 0.648312
Target:  5'- cGACGCGG-GugGCGGGCCGcCGgUGUa -3'
miRNA:   3'- -CUGUGCCuCugCGCUUGGU-GCgACAc -5'
14326 5' -55.5 NC_003521.1 + 23835 0.67 0.950135
Target:  5'- cGugGCGG-GAgGCcGACCugcugGCGCUGUGu -3'
miRNA:   3'- -CugUGCCuCUgCGcUUGG-----UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 25851 1.08 0.005969
Target:  5'- gGACACGGAGACGCGAACCACGCUGUGa -3'
miRNA:   3'- -CUGUGCCUCUGCGCUUGGUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 31026 0.7 0.823119
Target:  5'- gGACGCguucguggugguggGGGGugGgaGGACCACGCUGUu -3'
miRNA:   3'- -CUGUG--------------CCUCugCg-CUUGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 35392 0.7 0.841719
Target:  5'- --gGCGaGGACGCGGGCCGCGCg--- -3'
miRNA:   3'- cugUGCcUCUGCGCUUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 37410 0.67 0.938883
Target:  5'- uACACGGGccugaccguguGGCGCGGcGCCgagccucugaaggugACGCUGUGg -3'
miRNA:   3'- cUGUGCCU-----------CUGCGCU-UGG---------------UGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 46390 0.69 0.904728
Target:  5'- gGGCGCGGGGuGCGUGGGgCGCGCgGg- -3'
miRNA:   3'- -CUGUGCCUC-UGCGCUUgGUGCGaCac -5'
14326 5' -55.5 NC_003521.1 + 47561 0.66 0.96459
Target:  5'- --aGCGGGGAagacggcgaGCGGGCCACGgUGg- -3'
miRNA:   3'- cugUGCCUCUg--------CGCUUGGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 48724 0.67 0.954068
Target:  5'- aGAgGUGGAGACGCcGGCgACGCUGc- -3'
miRNA:   3'- -CUgUGCCUCUGCGcUUGgUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 56367 0.67 0.954068
Target:  5'- ---uCGGAcGACGCuGGCCugGCUGUc -3'
miRNA:   3'- cuguGCCU-CUGCGcUUGGugCGACAc -5'
14326 5' -55.5 NC_003521.1 + 57109 0.72 0.744774
Target:  5'- aGACACGaGGGACGCGAGggggaauCCGCGgUGg- -3'
miRNA:   3'- -CUGUGC-CUCUGCGCUU-------GGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 57693 0.72 0.755078
Target:  5'- uGCACGGGGAUGCGA-CCGcCGCaaccggGUGa -3'
miRNA:   3'- cUGUGCCUCUGCGCUuGGU-GCGa-----CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.