miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14338 3' -54 NC_003521.1 + 31221 1.07 0.009204
Target:  5'- aCUCUCCACGAAGCCGUCCACCGUAAAg -3'
miRNA:   3'- -GAGAGGUGCUUCGGCAGGUGGCAUUU- -5'
14338 3' -54 NC_003521.1 + 165695 0.76 0.599661
Target:  5'- gUCggCCGcCGaAAGCCGUCCACCGUGc- -3'
miRNA:   3'- gAGa-GGU-GC-UUCGGCAGGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 157085 0.75 0.629987
Target:  5'- uUCUCCugGugAGGUCGUCCuCCGUAGAc -3'
miRNA:   3'- gAGAGGugC--UUCGGCAGGuGGCAUUU- -5'
14338 3' -54 NC_003521.1 + 84972 0.75 0.680454
Target:  5'- aUCUCCACGAAGCgCGa-CACCGUGc- -3'
miRNA:   3'- gAGAGGUGCUUCG-GCagGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 200809 0.73 0.739628
Target:  5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3'
miRNA:   3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5'
14338 3' -54 NC_003521.1 + 582 0.73 0.739628
Target:  5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3'
miRNA:   3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5'
14338 3' -54 NC_003521.1 + 23966 0.72 0.786499
Target:  5'- -gCUCCACGGgccuggaacAGUCGUCCGCCGc--- -3'
miRNA:   3'- gaGAGGUGCU---------UCGGCAGGUGGCauuu -5'
14338 3' -54 NC_003521.1 + 166579 0.72 0.786499
Target:  5'- -aCUCCAgGAAcccGUCGUCCACCGUc-- -3'
miRNA:   3'- gaGAGGUgCUU---CGGCAGGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 232968 0.71 0.838182
Target:  5'- aUCcCCAUgGAGGCCGUCCGCCa---- -3'
miRNA:   3'- gAGaGGUG-CUUCGGCAGGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 148875 0.71 0.869083
Target:  5'- cCUCgccgCCACGggGuCCG-CCGCCGg--- -3'
miRNA:   3'- -GAGa---GGUGCuuC-GGCaGGUGGCauuu -5'
14338 3' -54 NC_003521.1 + 183950 0.7 0.883307
Target:  5'- gCUUUCCACcuucGCCauGUCCACCGUGGg -3'
miRNA:   3'- -GAGAGGUGcuu-CGG--CAGGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 235047 0.7 0.890095
Target:  5'- cCUCU-CAUGAGGCCGUCCGucaucCCGUc-- -3'
miRNA:   3'- -GAGAgGUGCUUCGGCAGGU-----GGCAuuu -5'
14338 3' -54 NC_003521.1 + 232372 0.69 0.914996
Target:  5'- ---aCCGCGAAGCggagGUCCACCGUc-- -3'
miRNA:   3'- gagaGGUGCUUCGg---CAGGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 53783 0.69 0.914996
Target:  5'- gUCUCCGCGGAGgCGUCaguuacaacuuCACCGa--- -3'
miRNA:   3'- gAGAGGUGCUUCgGCAG-----------GUGGCauuu -5'
14338 3' -54 NC_003521.1 + 163712 0.69 0.926061
Target:  5'- ---gCCACGAGGCCGaaUCCugCGUc-- -3'
miRNA:   3'- gagaGGUGCUUCGGC--AGGugGCAuuu -5'
14338 3' -54 NC_003521.1 + 218892 0.69 0.926061
Target:  5'- -gCUCCAgccCGAGGCCGcCCGCCa---- -3'
miRNA:   3'- gaGAGGU---GCUUCGGCaGGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 233168 0.69 0.931243
Target:  5'- gCUgUCCGCGccGCCGUggcggCCGCCGUu-- -3'
miRNA:   3'- -GAgAGGUGCuuCGGCA-----GGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 150791 0.69 0.936191
Target:  5'- ----gCugGAGGCCGUCUACCGcGAGa -3'
miRNA:   3'- gagagGugCUUCGGCAGGUGGCaUUU- -5'
14338 3' -54 NC_003521.1 + 54294 0.68 0.949645
Target:  5'- cCUC-CCACGGAGCCc-CCGCUGgcGAc -3'
miRNA:   3'- -GAGaGGUGCUUCGGcaGGUGGCauUU- -5'
14338 3' -54 NC_003521.1 + 192284 0.68 0.949645
Target:  5'- gUCUCCACGccGuucgucggcaCCGUCCGCgGUAGc -3'
miRNA:   3'- gAGAGGUGCuuC----------GGCAGGUGgCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.