miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14338 3' -54 NC_003521.1 + 582 0.73 0.739628
Target:  5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3'
miRNA:   3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5'
14338 3' -54 NC_003521.1 + 4231 0.66 0.986073
Target:  5'- gUCggagCCcCGAGGCUGgCUGCCGUGAGa -3'
miRNA:   3'- gAGa---GGuGCUUCGGCaGGUGGCAUUU- -5'
14338 3' -54 NC_003521.1 + 13920 0.66 0.978257
Target:  5'- ---gCCGCgGAGGCCGcgcuggCCGCCGUGGu -3'
miRNA:   3'- gagaGGUG-CUUCGGCa-----GGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 23611 0.67 0.97331
Target:  5'- cCUCUUCGCGAucuGCa--CCGCCGUGGc -3'
miRNA:   3'- -GAGAGGUGCUu--CGgcaGGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 23966 0.72 0.786499
Target:  5'- -gCUCCACGGgccuggaacAGUCGUCCGCCGc--- -3'
miRNA:   3'- gaGAGGUGCU---------UCGGCAGGUGGCauuu -5'
14338 3' -54 NC_003521.1 + 28970 0.66 0.986073
Target:  5'- uCUgUCCGCGAucguGGUCG-CUGCCGUAc- -3'
miRNA:   3'- -GAgAGGUGCU----UCGGCaGGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 31221 1.07 0.009204
Target:  5'- aCUCUCCACGAAGCCGUCCACCGUAAAg -3'
miRNA:   3'- -GAGAGGUGCUUCGGCAGGUGGCAUUU- -5'
14338 3' -54 NC_003521.1 + 32498 0.66 0.986073
Target:  5'- gUCgCCGCGAcAGUCGUCCAgguacUCGUAGGu -3'
miRNA:   3'- gAGaGGUGCU-UCGGCAGGU-----GGCAUUU- -5'
14338 3' -54 NC_003521.1 + 33133 0.67 0.970552
Target:  5'- uUCUCCagcacgccgaugACGAAGCCGUUgGCCu---- -3'
miRNA:   3'- gAGAGG------------UGCUUCGGCAGgUGGcauuu -5'
14338 3' -54 NC_003521.1 + 42551 0.67 0.964434
Target:  5'- -cCUCCGCGAcgcccggcuGGCUGUCCGgCGg--- -3'
miRNA:   3'- gaGAGGUGCU---------UCGGCAGGUgGCauuu -5'
14338 3' -54 NC_003521.1 + 49334 0.67 0.975876
Target:  5'- gUCUCUggGAAuGCCGUCUGCgCGUGu- -3'
miRNA:   3'- gAGAGGugCUU-CGGCAGGUG-GCAUuu -5'
14338 3' -54 NC_003521.1 + 53215 0.66 0.98436
Target:  5'- gCUCgcCCugGcAGGCCGUgcCCACCGgcAGc -3'
miRNA:   3'- -GAGa-GGugC-UUCGGCA--GGUGGCauUU- -5'
14338 3' -54 NC_003521.1 + 53783 0.69 0.914996
Target:  5'- gUCUCCGCGGAGgCGUCaguuacaacuuCACCGa--- -3'
miRNA:   3'- gAGAGGUGCUUCgGCAG-----------GUGGCauuu -5'
14338 3' -54 NC_003521.1 + 54275 0.66 0.98046
Target:  5'- uUCUCCACGGcgaagaGGCCGUugcggcuggCCA-CGUAGAg -3'
miRNA:   3'- gAGAGGUGCU------UCGGCA---------GGUgGCAUUU- -5'
14338 3' -54 NC_003521.1 + 54294 0.68 0.949645
Target:  5'- cCUC-CCACGGAGCCc-CCGCUGgcGAc -3'
miRNA:   3'- -GAGaGGUGCUUCGGcaGGUGGCauUU- -5'
14338 3' -54 NC_003521.1 + 61892 0.67 0.975876
Target:  5'- -gCUCCAgGAAGCCucgUCGCCGUc-- -3'
miRNA:   3'- gaGAGGUgCUUCGGca-GGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 84972 0.75 0.680454
Target:  5'- aUCUCCACGAAGCgCGa-CACCGUGc- -3'
miRNA:   3'- gAGAGGUGCUUCG-GCagGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 88439 0.68 0.953673
Target:  5'- gUCUCCAgGGAgacGUCGUCCGCCu---- -3'
miRNA:   3'- gAGAGGUgCUU---CGGCAGGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 88730 0.66 0.982491
Target:  5'- gUCUCCuCGcaGAGCCGgcgcacgUCGCCGUGGu -3'
miRNA:   3'- gAGAGGuGC--UUCGGCa------GGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 110569 0.66 0.982491
Target:  5'- ---cCCACGuAGUCGUCCACCu---- -3'
miRNA:   3'- gagaGGUGCuUCGGCAGGUGGcauuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.