Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14338 | 3' | -54 | NC_003521.1 | + | 142610 | 0.66 | 0.978257 |
Target: 5'- cCUC-CCACGccGCUGcCCGCCGa--- -3' miRNA: 3'- -GAGaGGUGCuuCGGCaGGUGGCauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 88439 | 0.68 | 0.953673 |
Target: 5'- gUCUCCAgGGAgacGUCGUCCGCCu---- -3' miRNA: 3'- gAGAGGUgCUU---CGGCAGGUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 192757 | 0.68 | 0.957478 |
Target: 5'- --gUCCGCG-GGCCGUCCAUCa---- -3' miRNA: 3'- gagAGGUGCuUCGGCAGGUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 117066 | 0.67 | 0.961064 |
Target: 5'- ---gCCGCGGAGCCGgcggucaCGCCGUGc- -3' miRNA: 3'- gagaGGUGCUUCGGCag-----GUGGCAUuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 42551 | 0.67 | 0.964434 |
Target: 5'- -cCUCCGCGAcgcccggcuGGCUGUCCGgCGg--- -3' miRNA: 3'- gaGAGGUGCU---------UCGGCAGGUgGCauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 203914 | 0.67 | 0.964434 |
Target: 5'- gUCUCCggacACGAAGCCucuUCCACCa---- -3' miRNA: 3'- gAGAGG----UGCUUCGGc--AGGUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 180075 | 0.67 | 0.967595 |
Target: 5'- uUCUCCcgcgGCGAcuGCCG-CCGCCGUu-- -3' miRNA: 3'- gAGAGG----UGCUu-CGGCaGGUGGCAuuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 33133 | 0.67 | 0.970552 |
Target: 5'- uUCUCCagcacgccgaugACGAAGCCGUUgGCCu---- -3' miRNA: 3'- gAGAGG------------UGCUUCGGCAGgUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 195934 | 0.67 | 0.975876 |
Target: 5'- aCUCggaCAU--AGCCGUCCugCGUGGg -3' miRNA: 3'- -GAGag-GUGcuUCGGCAGGugGCAUUu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 192284 | 0.68 | 0.949645 |
Target: 5'- gUCUCCACGccGuucgucggcaCCGUCCGCgGUAGc -3' miRNA: 3'- gAGAGGUGCuuC----------GGCAGGUGgCAUUu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 150791 | 0.69 | 0.936191 |
Target: 5'- ----gCugGAGGCCGUCUACCGcGAGa -3' miRNA: 3'- gagagGugCUUCGGCAGGUGGCaUUU- -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 233168 | 0.69 | 0.931243 |
Target: 5'- gCUgUCCGCGccGCCGUggcggCCGCCGUu-- -3' miRNA: 3'- -GAgAGGUGCuuCGGCA-----GGUGGCAuuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 165695 | 0.76 | 0.599661 |
Target: 5'- gUCggCCGcCGaAAGCCGUCCACCGUGc- -3' miRNA: 3'- gAGa-GGU-GC-UUCGGCAGGUGGCAUuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 157085 | 0.75 | 0.629987 |
Target: 5'- uUCUCCugGugAGGUCGUCCuCCGUAGAc -3' miRNA: 3'- gAGAGGugC--UUCGGCAGGuGGCAUUU- -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 200809 | 0.73 | 0.739628 |
Target: 5'- aCUUUCCGCuGAAGCCGUUC-CCGUu-- -3' miRNA: 3'- -GAGAGGUG-CUUCGGCAGGuGGCAuuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 166579 | 0.72 | 0.786499 |
Target: 5'- -aCUCCAgGAAcccGUCGUCCACCGUc-- -3' miRNA: 3'- gaGAGGUgCUU---CGGCAGGUGGCAuuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 232968 | 0.71 | 0.838182 |
Target: 5'- aUCcCCAUgGAGGCCGUCCGCCa---- -3' miRNA: 3'- gAGaGGUG-CUUCGGCAGGUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 232372 | 0.69 | 0.914996 |
Target: 5'- ---aCCGCGAAGCggagGUCCACCGUc-- -3' miRNA: 3'- gagaGGUGCUUCGg---CAGGUGGCAuuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 218892 | 0.69 | 0.926061 |
Target: 5'- -gCUCCAgccCGAGGCCGcCCGCCa---- -3' miRNA: 3'- gaGAGGU---GCUUCGGCaGGUGGcauuu -5' |
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14338 | 3' | -54 | NC_003521.1 | + | 163712 | 0.69 | 0.926061 |
Target: 5'- ---gCCACGAGGCCGaaUCCugCGUc-- -3' miRNA: 3'- gagaGGUGCUUCGGC--AGGugGCAuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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