miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1434 5' -59.5 NC_001335.1 + 32243 0.66 0.514644
Target:  5'- uCGAuGCCGACgaGCUGGCcGAguucgcgGGCCg -3'
miRNA:   3'- -GCU-CGGCUGgcUGACCGuCUa------CCGGg -5'
1434 5' -59.5 NC_001335.1 + 38942 0.66 0.514644
Target:  5'- -uGGUCGACCGACaGGCGcuucuucuuaccGuUGGCUCg -3'
miRNA:   3'- gcUCGGCUGGCUGaCCGU------------CuACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 12101 0.66 0.504495
Target:  5'- aCGGGCCacaauCCGACcgaGGCGGAacgGGCUg -3'
miRNA:   3'- -GCUCGGcu---GGCUGa--CCGUCUa--CCGGg -5'
1434 5' -59.5 NC_001335.1 + 36699 0.66 0.494434
Target:  5'- gGuAGUCGACUGGCcGGCGGucGUGguuGCCCu -3'
miRNA:   3'- gC-UCGGCUGGCUGaCCGUC--UAC---CGGG- -5'
1434 5' -59.5 NC_001335.1 + 522 0.66 0.493433
Target:  5'- -cGGCCGACCGACUucgugccGGCcuAUcucgcGGCCUg -3'
miRNA:   3'- gcUCGGCUGGCUGA-------CCGucUA-----CCGGG- -5'
1434 5' -59.5 NC_001335.1 + 38815 0.66 0.484466
Target:  5'- -cGGCCGGCgGguucaGCaGGUAcucGAUGGCCCg -3'
miRNA:   3'- gcUCGGCUGgC-----UGaCCGU---CUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 28276 0.66 0.474594
Target:  5'- -cGGCCGuaauGCCGuCUGGCAGuUGGaauCCg -3'
miRNA:   3'- gcUCGGC----UGGCuGACCGUCuACCg--GG- -5'
1434 5' -59.5 NC_001335.1 + 40224 0.67 0.45516
Target:  5'- aCGaAGCCGACCGuCUGgacccacaaGCGGAUcGaCCCg -3'
miRNA:   3'- -GC-UCGGCUGGCuGAC---------CGUCUAcC-GGG- -5'
1434 5' -59.5 NC_001335.1 + 38355 0.67 0.45516
Target:  5'- gCGGGCUGGCCGGCcGaGCGGAacuaaGCCg -3'
miRNA:   3'- -GCUCGGCUGGCUGaC-CGUCUac---CGGg -5'
1434 5' -59.5 NC_001335.1 + 5557 0.67 0.445606
Target:  5'- aGuGCCGgggcggcgguGCCGAgCaGGUAGAUGGUCUg -3'
miRNA:   3'- gCuCGGC----------UGGCU-GaCCGUCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 6979 0.67 0.417633
Target:  5'- --cGCCGcGCCuGCuUGGCGGAacucugUGGCCCc -3'
miRNA:   3'- gcuCGGC-UGGcUG-ACCGUCU------ACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 38071 0.67 0.417633
Target:  5'- cCGAGCUGugugggcuGCCGACgguggGGCucAGcgGaGCCCa -3'
miRNA:   3'- -GCUCGGC--------UGGCUGa----CCG--UCuaC-CGGG- -5'
1434 5' -59.5 NC_001335.1 + 17626 0.67 0.41672
Target:  5'- aCGAGauccuuaCCGGCCuGCaGGCcGAUGGCCa -3'
miRNA:   3'- -GCUC-------GGCUGGcUGaCCGuCUACCGGg -5'
1434 5' -59.5 NC_001335.1 + 48294 0.67 0.41672
Target:  5'- -cGGCCGGCCGGCcgaaccacacccuUGGCGug-GGCCa -3'
miRNA:   3'- gcUCGGCUGGCUG-------------ACCGUcuaCCGGg -5'
1434 5' -59.5 NC_001335.1 + 48358 0.67 0.404951
Target:  5'- -cGGCCGGCCGGCcgcgacaagguacGGCgcgagcgccgcaAGGUGGUCCa -3'
miRNA:   3'- gcUCGGCUGGCUGa------------CCG------------UCUACCGGG- -5'
1434 5' -59.5 NC_001335.1 + 22568 0.68 0.403159
Target:  5'- aGcGUCGACUGgacaaccagcagaacGCUGGCGGcGUGGCCg -3'
miRNA:   3'- gCuCGGCUGGC---------------UGACCGUC-UACCGGg -5'
1434 5' -59.5 NC_001335.1 + 1268 0.68 0.373479
Target:  5'- gGAGCCGG-CGGCggUGGCAGca-GCCCc -3'
miRNA:   3'- gCUCGGCUgGCUG--ACCGUCuacCGGG- -5'
1434 5' -59.5 NC_001335.1 + 39711 0.69 0.348551
Target:  5'- cCGAGCCGACUGggaacGCUacGGCaAGcgGGCUg -3'
miRNA:   3'- -GCUCGGCUGGC-----UGA--CCG-UCuaCCGGg -5'
1434 5' -59.5 NC_001335.1 + 32690 0.69 0.340509
Target:  5'- cCGcGCCGGCCaACggcGGCGGcgGUGGCCa -3'
miRNA:   3'- -GCuCGGCUGGcUGa--CCGUC--UACCGGg -5'
1434 5' -59.5 NC_001335.1 + 4926 0.69 0.340509
Target:  5'- aCGAGCaucACCGGCUugaucGGCaAGGccgcUGGCCCg -3'
miRNA:   3'- -GCUCGgc-UGGCUGA-----CCG-UCU----ACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.