miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 14108 0.67 0.871758
Target:  5'- -gGACGCUGCcuguGuCUGGG-UCCGCCgAa -3'
miRNA:   3'- caUUGCGACGu---C-GACCUgAGGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 141292 0.67 0.871758
Target:  5'- ---cCGCUGCGGCacGGuCUCCGaCCUg -3'
miRNA:   3'- cauuGCGACGUCGa-CCuGAGGC-GGGu -5'
14340 5' -57.9 NC_003521.1 + 27103 0.67 0.871758
Target:  5'- -cGGCGCcGUcuGGCUGGGCaUCCccgagGCCCAc -3'
miRNA:   3'- caUUGCGaCG--UCGACCUG-AGG-----CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 199977 0.67 0.871758
Target:  5'- cGUGACGUugUGCAGCaaGGugUCCauggcgcggGCCCc -3'
miRNA:   3'- -CAUUGCG--ACGUCGa-CCugAGG---------CGGGu -5'
14340 5' -57.9 NC_003521.1 + 181459 0.67 0.864539
Target:  5'- -cGGCGUccaGCGGCUGGcGCgCCGCCUg -3'
miRNA:   3'- caUUGCGa--CGUCGACC-UGaGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 217072 0.67 0.857123
Target:  5'- cGUGACGUaGUAGCccaGGAacagucggCCGCCCAg -3'
miRNA:   3'- -CAUUGCGaCGUCGa--CCUga------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 116760 0.67 0.857123
Target:  5'- -cGugGCuugUGCAGCgUGGGCcgCCGCCgCGg -3'
miRNA:   3'- caUugCG---ACGUCG-ACCUGa-GGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 176488 0.67 0.857122
Target:  5'- -gGGC-CUGCAGCUGGcucaUCUGCUCGu -3'
miRNA:   3'- caUUGcGACGUCGACCug--AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 200052 0.67 0.849514
Target:  5'- -cAACGCUGCcucaccGGCUGG-CUuaCCGCCg- -3'
miRNA:   3'- caUUGCGACG------UCGACCuGA--GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 176938 0.67 0.849514
Target:  5'- -cAACuGCUGCAGCUcccGGCgcgCCGCCUc -3'
miRNA:   3'- caUUG-CGACGUCGAc--CUGa--GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 240374 0.67 0.849514
Target:  5'- -cAACGCUGCcucaccGGCUGG-CUuaCCGCCg- -3'
miRNA:   3'- caUUGCGACG------UCGACCuGA--GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 112360 0.67 0.841719
Target:  5'- cGUAcgcACGCgGCGGCUGcGGCgUCuCGUCCAc -3'
miRNA:   3'- -CAU---UGCGaCGUCGAC-CUG-AG-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 144076 0.67 0.841719
Target:  5'- -cGGCGCUggGCAacguGCUGGGCuUCUGCCUc -3'
miRNA:   3'- caUUGCGA--CGU----CGACCUG-AGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 50211 0.67 0.840929
Target:  5'- cUGACGCuacUGCGGCUGGugUggaguuaCCGCUg- -3'
miRNA:   3'- cAUUGCG---ACGUCGACCugA-------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 138720 0.67 0.840929
Target:  5'- --uGCGCUGCacggagaAGCUGGGCcugcgcaucaUCaCGCCCu -3'
miRNA:   3'- cauUGCGACG-------UCGACCUG----------AG-GCGGGu -5'
14340 5' -57.9 NC_003521.1 + 70652 0.67 0.840929
Target:  5'- --cACGCUGCGGCUGGugcugcaGCUgCUGCUgGa -3'
miRNA:   3'- cauUGCGACGUCGACC-------UGA-GGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 200257 0.67 0.833744
Target:  5'- --cAUGCUGUGGCUGGGCUacuaCCGCg-- -3'
miRNA:   3'- cauUGCGACGUCGACCUGA----GGCGggu -5'
14340 5' -57.9 NC_003521.1 + 224428 0.67 0.833744
Target:  5'- -aGGCGCUGCGuGgUGGGCgagCgGUCCAg -3'
miRNA:   3'- caUUGCGACGU-CgACCUGa--GgCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 156001 0.68 0.825597
Target:  5'- -aGGCGCUGCgcgAGCUGGcccguauCgagCUGCCCGa -3'
miRNA:   3'- caUUGCGACG---UCGACCu------Ga--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 88274 0.68 0.825596
Target:  5'- cGUGACGCUgccguaccugaGCAGCgugcugGGGCUgagCGCCCu -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa-----CCUGAg--GCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.