miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 168150 0.68 0.825596
Target:  5'- -gGACGggGCGGaauagGGGCgCCGCCCAg -3'
miRNA:   3'- caUUGCgaCGUCga---CCUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 88274 0.68 0.825596
Target:  5'- cGUGACGCUgccguaccugaGCAGCgugcugGGGCUgagCGCCCu -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa-----CCUGAg--GCGGGu -5'
14340 5' -57.9 NC_003521.1 + 80862 0.68 0.82312
Target:  5'- uUGAgGCUggGUAGCUGGcACUCCucggugcggugguuGCCCAa -3'
miRNA:   3'- cAUUgCGA--CGUCGACC-UGAGG--------------CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 126786 0.68 0.817283
Target:  5'- cUGGCGCUGC-GCgUGGuccaGCUCCGCgCGc -3'
miRNA:   3'- cAUUGCGACGuCG-ACC----UGAGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 76498 0.68 0.800187
Target:  5'- -gGACGCgugGCGGCUGuGACUgCUGCUg- -3'
miRNA:   3'- caUUGCGa--CGUCGAC-CUGA-GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 125102 0.68 0.79142
Target:  5'- -aGGCGCUGCGGgaUGGGCaccacggCCGCCg- -3'
miRNA:   3'- caUUGCGACGUCg-ACCUGa------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 118265 0.68 0.791419
Target:  5'- cGUGACGCUagccaugaucuGCGGCgaccucuagGGACgCCGCCgCAa -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa--------CCUGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 160271 0.68 0.782517
Target:  5'- -cGACGaccucaugaGCGGcCUGGGCUCCGCCg- -3'
miRNA:   3'- caUUGCga-------CGUC-GACCUGAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 1632 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 201859 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 236345 0.68 0.782517
Target:  5'- ----gGuCUGCucuGCUGGAUcgCCGCCCAg -3'
miRNA:   3'- cauugC-GACGu--CGACCUGa-GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 119179 0.69 0.773487
Target:  5'- -cGGCGC-GCAGCUGGAUcuggggCCGCUUg -3'
miRNA:   3'- caUUGCGaCGUCGACCUGa-----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 29833 0.69 0.773487
Target:  5'- gGgcACGCUGCAGaugcacGGACUguucaCGCCCGg -3'
miRNA:   3'- -CauUGCGACGUCga----CCUGAg----GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 5215 0.69 0.773487
Target:  5'- -------cGCGGUcGGGCUCCGCCCGa -3'
miRNA:   3'- cauugcgaCGUCGaCCUGAGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 114309 0.69 0.755078
Target:  5'- aUAACGCcGCGGacCUGGGCUucugCCGCCUg -3'
miRNA:   3'- cAUUGCGaCGUC--GACCUGA----GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 110098 0.69 0.755078
Target:  5'- --cGCGCUGCGGUcaagcGGGCUCugacagCGCCCGu -3'
miRNA:   3'- cauUGCGACGUCGa----CCUGAG------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 50274 0.69 0.726718
Target:  5'- ---cCGCUGCAGCcGGG-UCCGCCg- -3'
miRNA:   3'- cauuGCGACGUCGaCCUgAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 92627 0.69 0.726717
Target:  5'- -cGACGCUGUuuCUGGACUCgGUgCAg -3'
miRNA:   3'- caUUGCGACGucGACCUGAGgCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 17177 0.7 0.718064
Target:  5'- -cAGCGCUGgCAGCUGGGCaggcgcaucguggaCGCCUAc -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGag------------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 98852 0.7 0.707412
Target:  5'- ---cCGCUGCAGCUccuGACgcucgUCGCCCAg -3'
miRNA:   3'- cauuGCGACGUCGAc--CUGa----GGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.