miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 168150 0.68 0.825596
Target:  5'- -gGACGggGCGGaauagGGGCgCCGCCCAg -3'
miRNA:   3'- caUUGCgaCGUCga---CCUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 76498 0.68 0.800187
Target:  5'- -gGACGCgugGCGGCUGuGACUgCUGCUg- -3'
miRNA:   3'- caUUGCGa--CGUCGAC-CUGA-GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 90823 0.7 0.707412
Target:  5'- gGUGGCGUcgucgUGCGGCgGGuGCgcgCCGCCCGu -3'
miRNA:   3'- -CAUUGCG-----ACGUCGaCC-UGa--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 113713 0.73 0.520691
Target:  5'- -aGACGCUGCuGgUGGACcucuucuaCCGCCCGa -3'
miRNA:   3'- caUUGCGACGuCgACCUGa-------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 141292 0.67 0.871758
Target:  5'- ---cCGCUGCGGCacGGuCUCCGaCCUg -3'
miRNA:   3'- cauuGCGACGUCGa-CCuGAGGC-GGGu -5'
14340 5' -57.9 NC_003521.1 + 176938 0.67 0.849514
Target:  5'- -cAACuGCUGCAGCUcccGGCgcgCCGCCUc -3'
miRNA:   3'- caUUG-CGACGUCGAc--CUGa--GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 160271 0.68 0.782517
Target:  5'- -cGACGaccucaugaGCGGcCUGGGCUCCGCCg- -3'
miRNA:   3'- caUUGCga-------CGUC-GACCUGAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 13712 0.73 0.511199
Target:  5'- -gAGCGCUGCgccagGGCUGGGaaCCGCUCAg -3'
miRNA:   3'- caUUGCGACG-----UCGACCUgaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 50211 0.67 0.840929
Target:  5'- cUGACGCuacUGCGGCUGGugUggaguuaCCGCUg- -3'
miRNA:   3'- cAUUGCG---ACGUCGACCugA-------GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 170084 0.76 0.371551
Target:  5'- cGgcGCGCUGCAGCUGGACgaagUGCCg- -3'
miRNA:   3'- -CauUGCGACGUCGACCUGag--GCGGgu -5'
14340 5' -57.9 NC_003521.1 + 118265 0.68 0.791419
Target:  5'- cGUGACGCUagccaugaucuGCGGCgaccucuagGGACgCCGCCgCAa -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa--------CCUGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 19663 0.68 0.825596
Target:  5'- cUGGgGCUGCugcGCUGGGCcgaGCCCAa -3'
miRNA:   3'- cAUUgCGACGu--CGACCUGaggCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 29833 0.69 0.773487
Target:  5'- gGgcACGCUGCAGaugcacGGACUguucaCGCCCGg -3'
miRNA:   3'- -CauUGCGACGUCga----CCUGAg----GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 98852 0.7 0.707412
Target:  5'- ---cCGCUGCAGCUccuGACgcucgUCGCCCAg -3'
miRNA:   3'- cauuGCGACGUCGAc--CUGa----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 59550 0.71 0.648312
Target:  5'- ----gGCUGCAGCUGGACgCCGUg-- -3'
miRNA:   3'- cauugCGACGUCGACCUGaGGCGggu -5'
14340 5' -57.9 NC_003521.1 + 137318 0.72 0.578898
Target:  5'- --cGCGcCUGCuGCUGGGCUC-GCCCu -3'
miRNA:   3'- cauUGC-GACGuCGACCUGAGgCGGGu -5'
14340 5' -57.9 NC_003521.1 + 72196 0.66 0.892181
Target:  5'- cGUGGCGCaGCAGCaacagcagaUGG-CgcaCGCCCAg -3'
miRNA:   3'- -CAUUGCGaCGUCG---------ACCuGag-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 7798 0.66 0.877388
Target:  5'- -cAGCGCUcgaagcgGCAGCUGGACggcgucaaggccaUCCgGCgCCAg -3'
miRNA:   3'- caUUGCGA-------CGUCGACCUG-------------AGG-CG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 14108 0.67 0.871758
Target:  5'- -gGACGCUGCcuguGuCUGGG-UCCGCCgAa -3'
miRNA:   3'- caUUGCGACGu---C-GACCUgAGGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 240374 0.67 0.849514
Target:  5'- -cAACGCUGCcucaccGGCUGG-CUuaCCGCCg- -3'
miRNA:   3'- caUUGCGACG------UCGACCuGA--GGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.