miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 122858 0.78 0.278833
Target:  5'- cGUAGCGCUGguGCUGGcCgCCGCCgCGa -3'
miRNA:   3'- -CAUUGCGACguCGACCuGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 1632 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 118265 0.68 0.791419
Target:  5'- cGUGACGCUagccaugaucuGCGGCgaccucuagGGACgCCGCCgCAa -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa--------CCUGaGGCGG-GU- -5'
14340 5' -57.9 NC_003521.1 + 117257 0.66 0.904728
Target:  5'- -cGGCGCUGCAcgacugccuggcGCUGcAC-CUGCCCGa -3'
miRNA:   3'- caUUGCGACGU------------CGACcUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 113713 0.73 0.520691
Target:  5'- -aGACGCUGCuGgUGGACcucuucuaCCGCCCGa -3'
miRNA:   3'- caUUGCGACGuCgACCUGa-------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 137318 0.72 0.578898
Target:  5'- --cGCGcCUGCuGCUGGGCUC-GCCCu -3'
miRNA:   3'- cauUGC-GACGuCGACCUGAGgCGGGu -5'
14340 5' -57.9 NC_003521.1 + 158109 0.72 0.608562
Target:  5'- -cAACGCaGCcucguuGCUGGACUUgGCCCGc -3'
miRNA:   3'- caUUGCGaCGu-----CGACCUGAGgCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 59550 0.71 0.648312
Target:  5'- ----gGCUGCAGCUGGACgCCGUg-- -3'
miRNA:   3'- cauugCGACGUCGACCUGaGGCGggu -5'
14340 5' -57.9 NC_003521.1 + 90823 0.7 0.707412
Target:  5'- gGUGGCGUcgucgUGCGGCgGGuGCgcgCCGCCCGu -3'
miRNA:   3'- -CAUUGCG-----ACGUCGaCC-UGa--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 5215 0.69 0.773487
Target:  5'- -------cGCGGUcGGGCUCCGCCCGa -3'
miRNA:   3'- cauugcgaCGUCGaCCUGAGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 17177 0.7 0.718064
Target:  5'- -cAGCGCUGgCAGCUGGGCaggcgcaucguggaCGCCUAc -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGag------------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 173544 0.7 0.687865
Target:  5'- -aGGCGCaGCGGCUGucCUCCcuGCCCGc -3'
miRNA:   3'- caUUGCGaCGUCGACcuGAGG--CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 216615 0.77 0.333548
Target:  5'- cUggUGCUGCuGUUGGACgacguUCCGCCCAu -3'
miRNA:   3'- cAuuGCGACGuCGACCUG-----AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 92627 0.69 0.726717
Target:  5'- -cGACGCUGUuuCUGGACUCgGUgCAg -3'
miRNA:   3'- caUUGCGACGucGACCUGAGgCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 170084 0.76 0.371551
Target:  5'- cGgcGCGCUGCAGCUGGACgaagUGCCg- -3'
miRNA:   3'- -CauUGCGACGUCGACCUGag--GCGGgu -5'
14340 5' -57.9 NC_003521.1 + 103006 0.7 0.668144
Target:  5'- -gAGCGCcuuaauaaUGCAGCUGcGCucgUCCGCCCGg -3'
miRNA:   3'- caUUGCG--------ACGUCGACcUG---AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 29833 0.69 0.773487
Target:  5'- gGgcACGCUGCAGaugcacGGACUguucaCGCCCGg -3'
miRNA:   3'- -CauUGCGACGUCga----CCUGAg----GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 160271 0.68 0.782517
Target:  5'- -cGACGaccucaugaGCGGcCUGGGCUCCGCCg- -3'
miRNA:   3'- caUUGCga-------CGUC-GACCUGAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 13712 0.73 0.511199
Target:  5'- -gAGCGCUGCgccagGGCUGGGaaCCGCUCAg -3'
miRNA:   3'- caUUGCGACG-----UCGACCUgaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 49799 0.72 0.598649
Target:  5'- -aGACGCUGCcgcccgaauGGCUGGGCgCCGUgCAg -3'
miRNA:   3'- caUUGCGACG---------UCGACCUGaGGCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.