miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 149619 0.66 0.904728
Target:  5'- --uGCGCgaaacgGC-GCUGGACgCCGCCg- -3'
miRNA:   3'- cauUGCGa-----CGuCGACCUGaGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 18798 0.66 0.904728
Target:  5'- -cAGCGCUGCuuucGCgUGGccaaguGCUucCCGCCCAc -3'
miRNA:   3'- caUUGCGACGu---CG-ACC------UGA--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 18923 0.66 0.898564
Target:  5'- gGUGGCGCcGCGcGCcGGcaaUCCGCCCc -3'
miRNA:   3'- -CAUUGCGaCGU-CGaCCug-AGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 28776 0.66 0.892182
Target:  5'- cUAGCGCUGCAcuuuCUGcGCUCCgacaaGCCCGu -3'
miRNA:   3'- cAUUGCGACGUc---GACcUGAGG-----CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 80310 0.66 0.885584
Target:  5'- gGUGACGgUGguGCUGGAgCUgCGCg-- -3'
miRNA:   3'- -CAUUGCgACguCGACCU-GAgGCGggu -5'
14340 5' -57.9 NC_003521.1 + 33033 0.66 0.878775
Target:  5'- -cAGCGCcgugccauagaGCAGCacgUGGAUgCCGCCCAg -3'
miRNA:   3'- caUUGCGa----------CGUCG---ACCUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 141985 0.66 0.898564
Target:  5'- ----aGCUGCAGCgGGAgCUggcCCGCgCCAa -3'
miRNA:   3'- cauugCGACGUCGaCCU-GA---GGCG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 47397 0.66 0.878775
Target:  5'- -gGGCGCUGCgcgagcggAGCUGGAUguagcaUCGCUCGg -3'
miRNA:   3'- caUUGCGACG--------UCGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 97992 0.66 0.904728
Target:  5'- -gGACGCUGguGUUGGuGCcgaugCCgaaGCCCAg -3'
miRNA:   3'- caUUGCGACguCGACC-UGa----GG---CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 165883 0.66 0.878775
Target:  5'- -aAGgGCagGCAGaUGGACUCCuuGCCCGu -3'
miRNA:   3'- caUUgCGa-CGUCgACCUGAGG--CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 110678 0.66 0.898564
Target:  5'- cGUAGCGCUcgguggcgGCAGCgGcGGCgCCGCCg- -3'
miRNA:   3'- -CAUUGCGA--------CGUCGaC-CUGaGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 7798 0.66 0.877388
Target:  5'- -cAGCGCUcgaagcgGCAGCUGGACggcgucaaggccaUCCgGCgCCAg -3'
miRNA:   3'- caUUGCGA-------CGUCGACCUG-------------AGG-CG-GGU- -5'
14340 5' -57.9 NC_003521.1 + 72196 0.66 0.892181
Target:  5'- cGUGGCGCaGCAGCaacagcagaUGG-CgcaCGCCCAg -3'
miRNA:   3'- -CAUUGCGaCGUCG---------ACCuGag-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 98522 0.66 0.892181
Target:  5'- -cGACGCgcGCGGCUGGGCcgCUGCa-- -3'
miRNA:   3'- caUUGCGa-CGUCGACCUGa-GGCGggu -5'
14340 5' -57.9 NC_003521.1 + 117257 0.66 0.904728
Target:  5'- -cGGCGCUGCAcgacugccuggcGCUGcAC-CUGCCCGa -3'
miRNA:   3'- caUUGCGACGU------------CGACcUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 162460 0.66 0.892181
Target:  5'- aGUAcgaGCUGCuGCUGGGCUUCauGCUCu -3'
miRNA:   3'- -CAUug-CGACGuCGACCUGAGG--CGGGu -5'
14340 5' -57.9 NC_003521.1 + 59488 0.66 0.904728
Target:  5'- --cACGCUGCAGCUacagaaccaGACggCGCCCu -3'
miRNA:   3'- cauUGCGACGUCGAc--------CUGagGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 70652 0.67 0.840929
Target:  5'- --cACGCUGCGGCUGGugcugcaGCUgCUGCUgGa -3'
miRNA:   3'- cauUGCGACGUCGACC-------UGA-GGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 181289 0.67 0.87459
Target:  5'- ----aGCUGCAGCcgGGAagagaagcucaggCCGCCCGc -3'
miRNA:   3'- cauugCGACGUCGa-CCUga-----------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 222601 0.67 0.871758
Target:  5'- -aAACGC-GCAGCUcgcGGaACUCCGCggCCGa -3'
miRNA:   3'- caUUGCGaCGUCGA---CC-UGAGGCG--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.