miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14349 3' -54.5 NC_003521.1 + 155450 0.66 0.98305
Target:  5'- cGCUGGgcgAGUCG-CaGcAGCCCGucgaGGUCUg -3'
miRNA:   3'- -CGACCa--UUAGCaGcC-UCGGGC----UCAGA- -5'
14349 3' -54.5 NC_003521.1 + 198163 0.66 0.981097
Target:  5'- aCUGaGUcGUCGUUGGAGaaguCCCGGGUa- -3'
miRNA:   3'- cGAC-CAuUAGCAGCCUC----GGGCUCAga -5'
14349 3' -54.5 NC_003521.1 + 76164 0.66 0.981097
Target:  5'- cGCaGGUAcagGUCGUCGcGGGCCUGcGUg- -3'
miRNA:   3'- -CGaCCAU---UAGCAGC-CUCGGGCuCAga -5'
14349 3' -54.5 NC_003521.1 + 124635 0.66 0.981097
Target:  5'- aGCaGGUAGUUGUCGaucaCCGGGUCg -3'
miRNA:   3'- -CGaCCAUUAGCAGCcucgGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 53597 0.66 0.981097
Target:  5'- uGCUGGUGGcCGaaGGGGagCGAGUCa -3'
miRNA:   3'- -CGACCAUUaGCagCCUCggGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 120988 0.66 0.978981
Target:  5'- aGCUcGUccUCGUCGGAGUCgGAGcCg -3'
miRNA:   3'- -CGAcCAuuAGCAGCCUCGGgCUCaGa -5'
14349 3' -54.5 NC_003521.1 + 4219 0.66 0.976694
Target:  5'- gGCgGG-AAgggUGUCGGAGCcCCGAGgCUg -3'
miRNA:   3'- -CGaCCaUUa--GCAGCCUCG-GGCUCaGA- -5'
14349 3' -54.5 NC_003521.1 + 168755 0.66 0.976694
Target:  5'- cCUGGUGGUCcgccuccuGUCGGAaGCCgGAGa-- -3'
miRNA:   3'- cGACCAUUAG--------CAGCCU-CGGgCUCaga -5'
14349 3' -54.5 NC_003521.1 + 95072 0.66 0.976694
Target:  5'- cGCUcaGGUAGUCGcgcaGGGGCUCGGG-Cg -3'
miRNA:   3'- -CGA--CCAUUAGCag--CCUCGGGCUCaGa -5'
14349 3' -54.5 NC_003521.1 + 98532 0.66 0.97573
Target:  5'- gGCUGGgccgcugcagCGgcggCGGgucccagcccgAGCCCGAGUCg -3'
miRNA:   3'- -CGACCauua------GCa---GCC-----------UCGGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 211400 0.67 0.97423
Target:  5'- cGCUGGUuguagcuGUCacCGGGGCCCGGacuGUCc -3'
miRNA:   3'- -CGACCAu------UAGcaGCCUCGGGCU---CAGa -5'
14349 3' -54.5 NC_003521.1 + 77716 0.67 0.97423
Target:  5'- gGCggcGGUGGUCGUggcgcUGGcGCCCGAGg-- -3'
miRNA:   3'- -CGa--CCAUUAGCA-----GCCuCGGGCUCaga -5'
14349 3' -54.5 NC_003521.1 + 115054 0.67 0.97423
Target:  5'- uUUGGguccaCGUCGGAgaaGCCCGAcGUCg -3'
miRNA:   3'- cGACCauua-GCAGCCU---CGGGCU-CAGa -5'
14349 3' -54.5 NC_003521.1 + 139158 0.67 0.971581
Target:  5'- uCUGGUGAagGUggaGGAGCCgGuGUCg -3'
miRNA:   3'- cGACCAUUagCAg--CCUCGGgCuCAGa -5'
14349 3' -54.5 NC_003521.1 + 177803 0.67 0.971581
Target:  5'- cGCUGGUGggCGUCGuGGGCgCCGccGG-CUu -3'
miRNA:   3'- -CGACCAUuaGCAGC-CUCG-GGC--UCaGA- -5'
14349 3' -54.5 NC_003521.1 + 87116 0.67 0.968742
Target:  5'- cGCUGGUGGacgcgCGUCccaaGGAGCgCGAGg-- -3'
miRNA:   3'- -CGACCAUUa----GCAG----CCUCGgGCUCaga -5'
14349 3' -54.5 NC_003521.1 + 118403 0.67 0.965708
Target:  5'- gGCguuGUGGUCGUCGc-GUCCGGGUCg -3'
miRNA:   3'- -CGac-CAUUAGCAGCcuCGGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 195736 0.67 0.965708
Target:  5'- gGCUggGGUGAUCGggcacgCGGAagauGUCCGGGUUUc -3'
miRNA:   3'- -CGA--CCAUUAGCa-----GCCU----CGGGCUCAGA- -5'
14349 3' -54.5 NC_003521.1 + 168021 0.68 0.951504
Target:  5'- uGCUGGUGGUgGUaGGcGUgCGGGUCUu -3'
miRNA:   3'- -CGACCAUUAgCAgCCuCGgGCUCAGA- -5'
14349 3' -54.5 NC_003521.1 + 168435 0.68 0.951504
Target:  5'- cGCUGGUGAUCGacgaGGAcgCCGAGUa- -3'
miRNA:   3'- -CGACCAUUAGCag--CCUcgGGCUCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.