miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1435 3' -57.4 NC_001335.1 + 4968 0.66 0.622999
Target:  5'- gCGGuguGCGAGUagACCCcgccgccuccguGCUGgaGCCCGACGa -3'
miRNA:   3'- aGCU---UGCUCG--UGGG------------CGAC--UGGGCUGU- -5'
1435 3' -57.4 NC_001335.1 + 11823 0.66 0.612166
Target:  5'- cCGGACG-GCACCgGCUccaACgCCGACc -3'
miRNA:   3'- aGCUUGCuCGUGGgCGAc--UG-GGCUGu -5'
1435 3' -57.4 NC_001335.1 + 5691 0.66 0.612166
Target:  5'- gUCGAGCaGGUGCUCGC-GGCCaGGCAg -3'
miRNA:   3'- -AGCUUGcUCGUGGGCGaCUGGgCUGU- -5'
1435 3' -57.4 NC_001335.1 + 18633 0.66 0.612166
Target:  5'- cCGGACuccGGUACCCGCU-ACCUGAa- -3'
miRNA:   3'- aGCUUGc--UCGUGGGCGAcUGGGCUgu -5'
1435 3' -57.4 NC_001335.1 + 16622 0.66 0.612166
Target:  5'- cCGGuaGCGAGCACagggCCGa-GGCCCGugAa -3'
miRNA:   3'- aGCU--UGCUCGUG----GGCgaCUGGGCugU- -5'
1435 3' -57.4 NC_001335.1 + 18261 0.66 0.601349
Target:  5'- -aGAACGcGCuguccgucguuGgCCGCUGACuuGACAu -3'
miRNA:   3'- agCUUGCuCG-----------UgGGCGACUGggCUGU- -5'
1435 3' -57.4 NC_001335.1 + 43227 0.66 0.601349
Target:  5'- cCGGACucgaAGCucaCCGUUGACCaCGACGa -3'
miRNA:   3'- aGCUUGc---UCGug-GGCGACUGG-GCUGU- -5'
1435 3' -57.4 NC_001335.1 + 5949 0.66 0.569087
Target:  5'- cCGAGCGGGUcggGCUgGcCUGugCCGugGa -3'
miRNA:   3'- aGCUUGCUCG---UGGgC-GACugGGCugU- -5'
1435 3' -57.4 NC_001335.1 + 31775 0.66 0.565882
Target:  5'- aUCGGGCGuGGCgguacgucaucaagGCCCGCUGGCaCGAg- -3'
miRNA:   3'- -AGCUUGC-UCG--------------UGGGCGACUGgGCUgu -5'
1435 3' -57.4 NC_001335.1 + 46436 0.67 0.526799
Target:  5'- -gGAACGAGCugC-GCUGGCUCuGCGc -3'
miRNA:   3'- agCUUGCUCGugGgCGACUGGGcUGU- -5'
1435 3' -57.4 NC_001335.1 + 7576 0.67 0.526799
Target:  5'- aUCGAgaagcuccGCGAGgGCCUGCUcaucGCCCGAg- -3'
miRNA:   3'- -AGCU--------UGCUCgUGGGCGAc---UGGGCUgu -5'
1435 3' -57.4 NC_001335.1 + 22024 0.67 0.516404
Target:  5'- cUCGAA-GAGCACCUGCUGaagcuGCCUcuggaGGCGc -3'
miRNA:   3'- -AGCUUgCUCGUGGGCGAC-----UGGG-----CUGU- -5'
1435 3' -57.4 NC_001335.1 + 40180 0.68 0.49587
Target:  5'- -aGAGCGcccAGCACCUGCUGGCgCaGugGg -3'
miRNA:   3'- agCUUGC---UCGUGGGCGACUGgG-CugU- -5'
1435 3' -57.4 NC_001335.1 + 4931 0.69 0.417871
Target:  5'- aCGAugGAcCAcCCCGgUGGCCCGGuCAa -3'
miRNA:   3'- aGCUugCUcGU-GGGCgACUGGGCU-GU- -5'
1435 3' -57.4 NC_001335.1 + 17252 0.69 0.408652
Target:  5'- -gGAGCGAGCugcagcaccgcGCCUGC-GACCUGGCc -3'
miRNA:   3'- agCUUGCUCG-----------UGGGCGaCUGGGCUGu -5'
1435 3' -57.4 NC_001335.1 + 39470 0.7 0.373076
Target:  5'- aCG-AUGAGCGCgaGCUGACCCcgcucGACAa -3'
miRNA:   3'- aGCuUGCUCGUGggCGACUGGG-----CUGU- -5'
1435 3' -57.4 NC_001335.1 + 19548 0.7 0.371354
Target:  5'- cUCGAugaacucccacuCGAGCACCCGCUcGCCagCGACc -3'
miRNA:   3'- -AGCUu-----------GCUCGUGGGCGAcUGG--GCUGu -5'
1435 3' -57.4 NC_001335.1 + 41286 0.7 0.364517
Target:  5'- uUCGAGCGAcCAUCCGCUGAggaUgGACAc -3'
miRNA:   3'- -AGCUUGCUcGUGGGCGACUg--GgCUGU- -5'
1435 3' -57.4 NC_001335.1 + 5777 0.71 0.336445
Target:  5'- cUCGGcacucugccuggccGCGAGCACCUGCUcgacgcccuugguGACCUGAUc -3'
miRNA:   3'- -AGCU--------------UGCUCGUGGGCGA-------------CUGGGCUGu -5'
1435 3' -57.4 NC_001335.1 + 10968 0.71 0.301029
Target:  5'- cCGAguACGAGCcaaGCUCGCUGAgCgCGACAc -3'
miRNA:   3'- aGCU--UGCUCG---UGGGCGACUgG-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.