miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 3' -57.1 NC_003521.1 + 59652 0.66 0.933838
Target:  5'- gGUGCgGCagaCGCUGGCGcgccUGGAGGa -3'
miRNA:   3'- gUACGaCGaugGCGGCCGCa---ACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 240386 0.66 0.92369
Target:  5'- aCcgGCUgGCUuACCGCCGGC-UUGGc-- -3'
miRNA:   3'- -GuaCGA-CGA-UGGCGGCCGcAACCucu -5'
14371 3' -57.1 NC_003521.1 + 35484 0.66 0.918278
Target:  5'- --cGCaGCUGCCGCCGcCGa-GGAGGc -3'
miRNA:   3'- guaCGaCGAUGGCGGCcGCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 220529 0.66 0.918278
Target:  5'- gGUGCUGCaUGgCGCCGGCGa------ -3'
miRNA:   3'- gUACGACG-AUgGCGGCCGCaaccucu -5'
14371 3' -57.1 NC_003521.1 + 144896 0.66 0.92369
Target:  5'- gAUGCUGCggGCCcacggcauGCCGGUGgccgaGGAGu -3'
miRNA:   3'- gUACGACGa-UGG--------CGGCCGCaa---CCUCu -5'
14371 3' -57.1 NC_003521.1 + 225076 0.66 0.92369
Target:  5'- gCAUGCUGCUGCC-CgGGCGcaccugcaGGAa- -3'
miRNA:   3'- -GUACGACGAUGGcGgCCGCaa------CCUcu -5'
14371 3' -57.1 NC_003521.1 + 200064 0.66 0.92369
Target:  5'- aCcgGCUgGCUuACCGCCGGC-UUGGc-- -3'
miRNA:   3'- -GuaCGA-CGA-UGGCGGCCGcAACCucu -5'
14371 3' -57.1 NC_003521.1 + 138021 0.66 0.928876
Target:  5'- gGUGCgcgUGCgucGCUGCCGGCGcacGGGGc -3'
miRNA:   3'- gUACG---ACGa--UGGCGGCCGCaa-CCUCu -5'
14371 3' -57.1 NC_003521.1 + 168972 0.66 0.928876
Target:  5'- --cGCUGCUGUCGCCGacgcGCGUcggucgcgGGAGGc -3'
miRNA:   3'- guaCGACGAUGGCGGC----CGCAa-------CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 140556 0.66 0.938575
Target:  5'- --gGCUGCUGCgG-CGGCGgcGGcGAc -3'
miRNA:   3'- guaCGACGAUGgCgGCCGCaaCCuCU- -5'
14371 3' -57.1 NC_003521.1 + 98148 0.66 0.92369
Target:  5'- --aGCUGCUGCCGCCGuCGcUGcuGAc -3'
miRNA:   3'- guaCGACGAUGGCGGCcGCaACcuCU- -5'
14371 3' -57.1 NC_003521.1 + 37109 0.66 0.92369
Target:  5'- cCcgGCUGCUGCUGCCGuCGcuacUGGcGGAc -3'
miRNA:   3'- -GuaCGACGAUGGCGGCcGCa---ACC-UCU- -5'
14371 3' -57.1 NC_003521.1 + 74891 0.66 0.92369
Target:  5'- --cGCUGCUGCgCGagaCGGUGgcggcggUGGAGu -3'
miRNA:   3'- guaCGACGAUG-GCg--GCCGCa------ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 92266 0.66 0.938575
Target:  5'- gGUGCcGCUGCCGCuacCGGCc--GGAGc -3'
miRNA:   3'- gUACGaCGAUGGCG---GCCGcaaCCUCu -5'
14371 3' -57.1 NC_003521.1 + 17766 0.66 0.938575
Target:  5'- --gGCcG-UACCGCCGGCGgcGGAc- -3'
miRNA:   3'- guaCGaCgAUGGCGGCCGCaaCCUcu -5'
14371 3' -57.1 NC_003521.1 + 209128 0.66 0.913216
Target:  5'- aCAUGCUGCcGCCGCCccacuuucaccUGGAGAa -3'
miRNA:   3'- -GUACGACGaUGGCGGccgca------ACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 202547 0.66 0.933838
Target:  5'- ---cCUGCUGCgCGCCGGCcuccUGGGGc -3'
miRNA:   3'- guacGACGAUG-GCGGCCGca--ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 158186 0.66 0.916051
Target:  5'- -uUGCUGCggacgcccuccuCCGgCGGCGUguaUGGAGc -3'
miRNA:   3'- guACGACGau----------GGCgGCCGCA---ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 87712 0.66 0.92369
Target:  5'- --cGcCUGCUGCCGucgcgcgcgcCCGGCGgcgUGGuGGg -3'
miRNA:   3'- guaC-GACGAUGGC----------GGCCGCa--ACCuCU- -5'
14371 3' -57.1 NC_003521.1 + 33041 0.66 0.92369
Target:  5'- --aGCUGUaGCCGUCGucCGggGGAGAg -3'
miRNA:   3'- guaCGACGaUGGCGGCc-GCaaCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.