miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 3' -57.1 NC_003521.1 + 67655 0.69 0.828528
Target:  5'- aCAUGCUGC-ACUGCCuGUGgcUGGAGc -3'
miRNA:   3'- -GUACGACGaUGGCGGcCGCa-ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 150697 0.71 0.671916
Target:  5'- gGUGCUGCUG-CGCCGGCGgcgacUGGc-- -3'
miRNA:   3'- gUACGACGAUgGCGGCCGCa----ACCucu -5'
14371 3' -57.1 NC_003521.1 + 155720 0.71 0.681768
Target:  5'- --cGCcGCUGCCGCCGcCGaUGGGGGa -3'
miRNA:   3'- guaCGaCGAUGGCGGCcGCaACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 60682 0.71 0.71106
Target:  5'- uCGUGCUGCgGCCGCgCGGgGgacccGGGGGc -3'
miRNA:   3'- -GUACGACGaUGGCG-GCCgCaa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 133647 0.7 0.730286
Target:  5'- --aGCUGCUGCUGCUGGaccugcccCGccUGGAGAa -3'
miRNA:   3'- guaCGACGAUGGCGGCC--------GCa-ACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 50293 0.7 0.736943
Target:  5'- --cGCUGCUGCCGCCGcaccucgcuccucaGCcagGGAGGc -3'
miRNA:   3'- guaCGACGAUGGCGGC--------------CGcaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 192030 0.7 0.758505
Target:  5'- gGUuCUGC-ACCGCCGGCGUgcgcGGcAGAc -3'
miRNA:   3'- gUAcGACGaUGGCGGCCGCAa---CC-UCU- -5'
14371 3' -57.1 NC_003521.1 + 97507 0.69 0.785777
Target:  5'- --gGCUGUcucUACCGCgGGCGaccacGGAGAg -3'
miRNA:   3'- guaCGACG---AUGGCGgCCGCaa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 32896 0.69 0.81188
Target:  5'- gGUGCUGCcGCCGugcccgccgcccCCGGCGUagguggcgccGGAGAg -3'
miRNA:   3'- gUACGACGaUGGC------------GGCCGCAa---------CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 44228 0.72 0.652129
Target:  5'- --gGCUGCUcaagcucuGCCGCCGuGCGcgGGAGu -3'
miRNA:   3'- guaCGACGA--------UGGCGGC-CGCaaCCUCu -5'
14371 3' -57.1 NC_003521.1 + 192359 0.72 0.622354
Target:  5'- gGUGCUcGC-ACgGgCGGCGUUGGGGGa -3'
miRNA:   3'- gUACGA-CGaUGgCgGCCGCAACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 18714 0.73 0.612433
Target:  5'- uCcgGCUgugGCUGCCGCUGGCGgcGGcGAu -3'
miRNA:   3'- -GuaCGA---CGAUGGCGGCCGCaaCCuCU- -5'
14371 3' -57.1 NC_003521.1 + 117193 0.77 0.359304
Target:  5'- --cGCUGCcGCCGCCcgaGGCGgUGGAGAu -3'
miRNA:   3'- guaCGACGaUGGCGG---CCGCaACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 116375 0.75 0.49623
Target:  5'- --aGCUGCUGCUGCCGcGCGacgUGGuGGAa -3'
miRNA:   3'- guaCGACGAUGGCGGC-CGCa--ACC-UCU- -5'
14371 3' -57.1 NC_003521.1 + 196674 0.74 0.524533
Target:  5'- --aGCUGCUGCuCGacgaCGGCGUcGGAGGa -3'
miRNA:   3'- guaCGACGAUG-GCg---GCCGCAaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 80 0.74 0.54374
Target:  5'- gCGUGUcGCuUGCCGCgGGCGUgcagGGAGGc -3'
miRNA:   3'- -GUACGaCG-AUGGCGgCCGCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 240629 0.74 0.54374
Target:  5'- gCGUGUcGCuUGCCGCgGGCGUgcagGGAGGc -3'
miRNA:   3'- -GUACGaCG-AUGGCGgCCGCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 167593 0.73 0.572956
Target:  5'- -cUGCUGUUGCCGCUcgugguGGCGUUGGu-- -3'
miRNA:   3'- guACGACGAUGGCGG------CCGCAACCucu -5'
14371 3' -57.1 NC_003521.1 + 116889 0.73 0.582782
Target:  5'- --gGCUGCggcgGCgCGCCGGCG--GGAGAc -3'
miRNA:   3'- guaCGACGa---UG-GCGGCCGCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 193418 0.73 0.612433
Target:  5'- -uUGCUcCUACCGCCGGCcUUGGGc- -3'
miRNA:   3'- guACGAcGAUGGCGGCCGcAACCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.