miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 3' -57.1 NC_003521.1 + 80 0.74 0.54374
Target:  5'- gCGUGUcGCuUGCCGCgGGCGUgcagGGAGGc -3'
miRNA:   3'- -GUACGaCG-AUGGCGgCCGCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 2319 0.66 0.933838
Target:  5'- ---cCUGCUGCgCGCCGGCcuccUGGGGc -3'
miRNA:   3'- guacGACGAUG-GCGGCCGca--ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 2753 0.67 0.881165
Target:  5'- -cUGCUGCUACUGCaaagGGaCGacGGAGGu -3'
miRNA:   3'- guACGACGAUGGCGg---CC-GCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 13193 0.75 0.468637
Target:  5'- gCGUGCcGCUcggGCCGCC-GUGUUGGAGGg -3'
miRNA:   3'- -GUACGaCGA---UGGCGGcCGCAACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 17766 0.66 0.938575
Target:  5'- --gGCcG-UACCGCCGGCGgcGGAc- -3'
miRNA:   3'- guaCGaCgAUGGCGGCCGCaaCCUcu -5'
14371 3' -57.1 NC_003521.1 + 17771 0.67 0.90738
Target:  5'- uGUGCUGUgacgaugaccuggagGCCGUCGGCGUgcUGGc-- -3'
miRNA:   3'- gUACGACGa--------------UGGCGGCCGCA--ACCucu -5'
14371 3' -57.1 NC_003521.1 + 18714 0.73 0.612433
Target:  5'- uCcgGCUgugGCUGCCGCUGGCGgcGGcGAu -3'
miRNA:   3'- -GuaCGA---CGAUGGCGGCCGCaaCCuCU- -5'
14371 3' -57.1 NC_003521.1 + 32896 0.69 0.81188
Target:  5'- gGUGCUGCcGCCGugcccgccgcccCCGGCGUagguggcgccGGAGAg -3'
miRNA:   3'- gUACGACGaUGGC------------GGCCGCAa---------CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 33041 0.66 0.92369
Target:  5'- --aGCUGUaGCCGUCGucCGggGGAGAg -3'
miRNA:   3'- guaCGACGaUGGCGGCc-GCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 33932 0.7 0.736943
Target:  5'- aCAUGgUGCUGCUGUgCGGCGUgcgcggcgagcagcUGGAGc -3'
miRNA:   3'- -GUACgACGAUGGCG-GCCGCA--------------ACCUCu -5'
14371 3' -57.1 NC_003521.1 + 35484 0.66 0.918278
Target:  5'- --cGCaGCUGCCGCCGcCGa-GGAGGc -3'
miRNA:   3'- guaCGaCGAUGGCGGCcGCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 36382 0.7 0.739783
Target:  5'- gCGUGCUGCUuuccguGCUGCUGGCGgcagcgcGGGGc -3'
miRNA:   3'- -GUACGACGA------UGGCGGCCGCaa-----CCUCu -5'
14371 3' -57.1 NC_003521.1 + 37109 0.66 0.92369
Target:  5'- cCcgGCUGCUGCUGCCGuCGcuacUGGcGGAc -3'
miRNA:   3'- -GuaCGACGAUGGCGGCcGCa---ACC-UCU- -5'
14371 3' -57.1 NC_003521.1 + 38448 0.68 0.851458
Target:  5'- -uUGCUGCUGCUggagcagGUCGGCGgccgUGGGa- -3'
miRNA:   3'- guACGACGAUGG-------CGGCCGCa---ACCUcu -5'
14371 3' -57.1 NC_003521.1 + 40402 0.74 0.54374
Target:  5'- gCGUGUcGCuUGCCGCgGGCGUgcagGGAGGc -3'
miRNA:   3'- -GUACGaCG-AUGGCGgCCGCAa---CCUCU- -5'
14371 3' -57.1 NC_003521.1 + 42842 0.66 0.928876
Target:  5'- gUAUGCUaccccgGgaACUGCCGGCGUcGGAc- -3'
miRNA:   3'- -GUACGA------CgaUGGCGGCCGCAaCCUcu -5'
14371 3' -57.1 NC_003521.1 + 43121 0.66 0.928876
Target:  5'- --cGCUGCggcgAgCGCuCGGCGcugggcgUGGAGGu -3'
miRNA:   3'- guaCGACGa---UgGCG-GCCGCa------ACCUCU- -5'
14371 3' -57.1 NC_003521.1 + 44228 0.72 0.652129
Target:  5'- --gGCUGCUcaagcucuGCCGCCGuGCGcgGGAGu -3'
miRNA:   3'- guaCGACGA--------UGGCGGC-CGCaaCCUCu -5'
14371 3' -57.1 NC_003521.1 + 44503 0.69 0.794619
Target:  5'- --aGCUGCaGCCGCCgucgucaggcGGCGcaGGGGAa -3'
miRNA:   3'- guaCGACGaUGGCGG----------CCGCaaCCUCU- -5'
14371 3' -57.1 NC_003521.1 + 44637 0.67 0.881165
Target:  5'- gAUGaUGCgcCUGUgGGUGUUGGAGAa -3'
miRNA:   3'- gUACgACGauGGCGgCCGCAACCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.