miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 240570 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 240373 0.67 0.94386
Target:  5'- uUUUCAGAGGcaaaCgGCG-AGAAGCGCAg -3'
miRNA:   3'- cAGGGUCUCCa---GgUGCuUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 240059 0.7 0.812041
Target:  5'- aUCCCAGGGGUCCGCccucacuGGGAAuGUGUg -3'
miRNA:   3'- cAGGGUCUCCAGGUGc------UUCUU-CGCGu -5'
14378 3' -55.8 NC_003521.1 + 239746 0.74 0.601003
Target:  5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3'
miRNA:   3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 238421 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 230855 0.68 0.881776
Target:  5'- uUCCCgaGGGGGUCagACGggGAcgucauuuuaguGGCGCGc -3'
miRNA:   3'- cAGGG--UCUCCAGg-UGCuuCU------------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 228972 0.69 0.852666
Target:  5'- cGUCCgaGGAGGUgCGCG-GGcGGCGCAg -3'
miRNA:   3'- -CAGGg-UCUCCAgGUGCuUCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 216522 0.71 0.785735
Target:  5'- -gCCCGGAGGgg-ACGAGGAAGCGa- -3'
miRNA:   3'- caGGGUCUCCaggUGCUUCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 203515 0.66 0.952209
Target:  5'- -aCCCAGAGGag-ACGugcagacGGAGGCGCAg -3'
miRNA:   3'- caGGGUCUCCaggUGCu------UCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 195543 0.7 0.794647
Target:  5'- -gCCCAGcggcgcccGGUCCAUGAucuccaGGAAGCGCu -3'
miRNA:   3'- caGGGUCu-------CCAGGUGCU------UCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 185766 0.79 0.356493
Target:  5'- -gCCUAGGGG-CCGCGAuGGAGCGCAa -3'
miRNA:   3'- caGGGUCUCCaGGUGCUuCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 181879 0.67 0.929648
Target:  5'- --gCCAGAGGgCCugGuggaguucGAGGCGCAg -3'
miRNA:   3'- cagGGUCUCCaGGugCuu------CUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 178662 0.67 0.93935
Target:  5'- aGUCCCAGcAGGUgcgCCGCGuGGAugaacaucGCGCu -3'
miRNA:   3'- -CAGGGUC-UCCA---GGUGCuUCUu-------CGCGu -5'
14378 3' -55.8 NC_003521.1 + 178443 0.67 0.94386
Target:  5'- cGUCUCcGuGGUUCcguUGAAGggGCGCGa -3'
miRNA:   3'- -CAGGGuCuCCAGGu--GCUUCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 174208 0.68 0.887869
Target:  5'- -gCCCAcguuGGGGUCgCGCGGgucgggcAGggGCGCGu -3'
miRNA:   3'- caGGGU----CUCCAG-GUGCU-------UCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 169043 0.74 0.620982
Target:  5'- cGUCCUGGucGUCCGgGggGAuGCGCAa -3'
miRNA:   3'- -CAGGGUCucCAGGUgCuuCUuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 168906 0.7 0.820507
Target:  5'- cGUCCCguAGGGGUagacgugaUGCGAGGAGgGCGCAg -3'
miRNA:   3'- -CAGGG--UCUCCAg-------GUGCUUCUU-CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 168090 0.69 0.851897
Target:  5'- -cUgCAGAGGUCgGCGAAGAccgaggaGGCGUg -3'
miRNA:   3'- caGgGUCUCCAGgUGCUUCU-------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 164813 0.68 0.901403
Target:  5'- aUCCCGGAGcGcCCGCGggGGAGg--- -3'
miRNA:   3'- cAGGGUCUC-CaGGUGCuuCUUCgcgu -5'
14378 3' -55.8 NC_003521.1 + 159829 0.68 0.888536
Target:  5'- -gCCguGAGGcgCUGCGcGGAGGCGCGa -3'
miRNA:   3'- caGGguCUCCa-GGUGCuUCUUCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.