miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 56624 1.08 0.005079
Target:  5'- cGUCCCAGAGGUCCACGAAGAAGCGCAc -3'
miRNA:   3'- -CAGGGUCUCCAGGUGCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 58861 0.68 0.913382
Target:  5'- -gCCCAGcAGGUaaaggcCCACGAgaGGuGGCGCGg -3'
miRNA:   3'- caGGGUC-UCCA------GGUGCU--UCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 66382 0.66 0.956053
Target:  5'- -gCCCAGAGGaUCAUGAaaacucuggacgAGGAGCGgGa -3'
miRNA:   3'- caGGGUCUCCaGGUGCU------------UCUUCGCgU- -5'
14378 3' -55.8 NC_003521.1 + 78890 0.66 0.949798
Target:  5'- cGUCa-GGGGGUCCACGcgggccucguagacgGGGAAGcCGCGc -3'
miRNA:   3'- -CAGggUCUCCAGGUGC---------------UUCUUC-GCGU- -5'
14378 3' -55.8 NC_003521.1 + 87130 0.7 0.82881
Target:  5'- cGUCCCAaggagcgcGAGGUgUugGAGcGGGCGCAg -3'
miRNA:   3'- -CAGGGU--------CUCCAgGugCUUcUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 88897 0.68 0.888536
Target:  5'- -aCCguGAGGcCCACGAgcagAGGAGCGa- -3'
miRNA:   3'- caGGguCUCCaGGUGCU----UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 89742 0.66 0.952209
Target:  5'- -aCCCgAGGGGUCgGCGGuccAGAAacccGCGCGc -3'
miRNA:   3'- caGGG-UCUCCAGgUGCU---UCUU----CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 91422 0.66 0.953773
Target:  5'- cGUCCguGAcGGccacggCCACGAAgcccacgggggugacGAGGCGCAg -3'
miRNA:   3'- -CAGGguCU-CCa-----GGUGCUU---------------CUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 92073 0.7 0.820507
Target:  5'- -aCCCAGA--UCCAUGAAGAGGCacuGCAc -3'
miRNA:   3'- caGGGUCUccAGGUGCUUCUUCG---CGU- -5'
14378 3' -55.8 NC_003521.1 + 92292 0.69 0.867625
Target:  5'- cGUCCUcGGGGaaggCgCGgGAGGAGGCGCAg -3'
miRNA:   3'- -CAGGGuCUCCa---G-GUgCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 94361 0.72 0.709429
Target:  5'- cUCCUcGAGGUCCgacucggACGAGGAGGUGUg -3'
miRNA:   3'- cAGGGuCUCCAGG-------UGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 97158 0.67 0.935096
Target:  5'- uUCCaguggucgugguggaAGAGGUCCGUGuGGAAGCGCc -3'
miRNA:   3'- cAGGg--------------UCUCCAGGUGCuUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 110561 0.66 0.963098
Target:  5'- uGUUCCGGGuGaUCCACGuacGGGAGCGUg -3'
miRNA:   3'- -CAGGGUCUcC-AGGUGCu--UCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 116724 0.66 0.959681
Target:  5'- uUCCaCGGcGGUCC-CGGAGucGGCGCc -3'
miRNA:   3'- cAGG-GUCuCCAGGuGCUUCu-UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 120475 0.67 0.929648
Target:  5'- cGUCCgCAGGuGucUCCGCcGAGAGGCGCGu -3'
miRNA:   3'- -CAGG-GUCUcC--AGGUGcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 120551 0.72 0.720135
Target:  5'- --gCCGGcGGUCC-CGggGGAGCGCc -3'
miRNA:   3'- cagGGUCuCCAGGuGCuuCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 134198 0.67 0.924454
Target:  5'- -----uGAGGUCguCGGAGAAGCGCu -3'
miRNA:   3'- caggguCUCCAGguGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 134647 0.68 0.901403
Target:  5'- cUCUCggAGAGGUCgCGCagGAAGAAGUGCu -3'
miRNA:   3'- cAGGG--UCUCCAG-GUG--CUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 142313 0.67 0.94386
Target:  5'- aGUCCCAGAuGUCCACGAcGAccacccAGCc-- -3'
miRNA:   3'- -CAGGGUCUcCAGGUGCUuCU------UCGcgu -5'
14378 3' -55.8 NC_003521.1 + 151726 0.66 0.952209
Target:  5'- cGUCCUGGcGGGUgaUGCGAaagaAGAAGCGCGu -3'
miRNA:   3'- -CAGGGUC-UCCAg-GUGCU----UCUUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.