miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 47538 0.73 0.660977
Target:  5'- uGUCCCGGAGGUCguccaugucgaGCGggGAAGacgGCGa -3'
miRNA:   3'- -CAGGGUCUCCAGg----------UGCuuCUUCg--CGU- -5'
14378 3' -55.8 NC_003521.1 + 29634 0.72 0.720135
Target:  5'- -cCCCGGAGGaaCGCGAAGAagacacgcuccgGGCGCu -3'
miRNA:   3'- caGGGUCUCCagGUGCUUCU------------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 33066 0.71 0.748854
Target:  5'- -gCCCAGcGGGUCCAUGAAGAuGGCcuucuGCAc -3'
miRNA:   3'- caGGGUC-UCCAGGUGCUUCU-UCG-----CGU- -5'
14378 3' -55.8 NC_003521.1 + 168906 0.7 0.820507
Target:  5'- cGUCCCguAGGGGUagacgugaUGCGAGGAGgGCGCAg -3'
miRNA:   3'- -CAGGG--UCUCCAg-------GUGCUUCUU-CGCGU- -5'
14378 3' -55.8 NC_003521.1 + 164813 0.68 0.901403
Target:  5'- aUCCCGGAGcGcCCGCGggGGAGg--- -3'
miRNA:   3'- cAGGGUCUC-CaGGUGCuuCUUCgcgu -5'
14378 3' -55.8 NC_003521.1 + 134647 0.68 0.901403
Target:  5'- cUCUCggAGAGGUCgCGCagGAAGAAGUGCu -3'
miRNA:   3'- cAGGG--UCUCCAG-GUG--CUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 159829 0.68 0.888536
Target:  5'- -gCCguGAGGcgCUGCGcGGAGGCGCGa -3'
miRNA:   3'- caGGguCUCCa-GGUGCuUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 88897 0.68 0.888536
Target:  5'- -aCCguGAGGcCCACGAgcagAGGAGCGa- -3'
miRNA:   3'- caGGguCUCCaGGUGCU----UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 230855 0.68 0.881776
Target:  5'- uUCCCgaGGGGGUCagACGggGAcgucauuuuaguGGCGCGc -3'
miRNA:   3'- cAGGG--UCUCCAGg-UGCuuCU------------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 228972 0.69 0.852666
Target:  5'- cGUCCgaGGAGGUgCGCG-GGcGGCGCAg -3'
miRNA:   3'- -CAGGg-UCUCCAgGUGCuUCuUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 195543 0.7 0.794647
Target:  5'- -gCCCAGcggcgcccGGUCCAUGAucuccaGGAAGCGCu -3'
miRNA:   3'- caGGGUCu-------CCAGGUGCU------UCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 152075 0.7 0.794647
Target:  5'- uUCUCGGAGGaCCACGgcGAcGUGCGc -3'
miRNA:   3'- cAGGGUCUCCaGGUGCuuCUuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 216522 0.71 0.785735
Target:  5'- -gCCCGGAGGgg-ACGAGGAAGCGa- -3'
miRNA:   3'- caGGGUCUCCaggUGCUUCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 17230 0.71 0.758243
Target:  5'- gGUCUCGGAGG-CCGagguGGAGGCGCGc -3'
miRNA:   3'- -CAGGGUCUCCaGGUgcu-UCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 4028 0.72 0.729792
Target:  5'- cGUUCCucAGGUCCGCGAauAGGAGCGg- -3'
miRNA:   3'- -CAGGGucUCCAGGUGCU--UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 120551 0.72 0.720135
Target:  5'- --gCCGGcGGUCC-CGggGGAGCGCc -3'
miRNA:   3'- cagGGUCuCCAGGuGCuuCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 94361 0.72 0.709429
Target:  5'- cUCCUcGAGGUCCgacucggACGAGGAGGUGUg -3'
miRNA:   3'- cAGGGuCUCCAGG-------UGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 6760 0.72 0.690766
Target:  5'- aGUCCCAGGGcGUCCAUGGccAGGAGUa-- -3'
miRNA:   3'- -CAGGGUCUC-CAGGUGCU--UCUUCGcgu -5'
14378 3' -55.8 NC_003521.1 + 39519 0.74 0.601003
Target:  5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3'
miRNA:   3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 36432 0.66 0.959681
Target:  5'- --gUCGGAGGgCCGCGGAGAcgaguuGCGCu -3'
miRNA:   3'- cagGGUCUCCaGGUGCUUCUu-----CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.