miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 38193 0.67 0.919032
Target:  5'- cUCCCAgugcucgcggucGAGGUCgGgcAGGAGGCGCAg -3'
miRNA:   3'- cAGGGU------------CUCCAGgUgcUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 157032 0.69 0.874804
Target:  5'- gGUUUCGGGGGcgCgGuCGGAGGAGCGCGg -3'
miRNA:   3'- -CAGGGUCUCCa-GgU-GCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 87130 0.7 0.82881
Target:  5'- cGUCCCAaggagcgcGAGGUgUugGAGcGGGCGCAg -3'
miRNA:   3'- -CAGGGU--------CUCCAgGugCUUcUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 142313 0.67 0.94386
Target:  5'- aGUCCCAGAuGUCCACGAcGAccacccAGCc-- -3'
miRNA:   3'- -CAGGGUCUcCAGGUGCUuCU------UCGcgu -5'
14378 3' -55.8 NC_003521.1 + 40343 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 92073 0.7 0.820507
Target:  5'- -aCCCAGA--UCCAUGAAGAGGCacuGCAc -3'
miRNA:   3'- caGGGUCUccAGGUGCUUCUUCG---CGU- -5'
14378 3' -55.8 NC_003521.1 + 40978 0.67 0.94386
Target:  5'- -cCCCGGGGGgaCGCGGAGGAGgGgGg -3'
miRNA:   3'- caGGGUCUCCagGUGCUUCUUCgCgU- -5'
14378 3' -55.8 NC_003521.1 + 240059 0.7 0.812041
Target:  5'- aUCCCAGGGGUCCGCccucacuGGGAAuGUGUg -3'
miRNA:   3'- cAGGGUCUCCAGGUGc------UUCUU-CGCGu -5'
14378 3' -55.8 NC_003521.1 + 178662 0.67 0.93935
Target:  5'- aGUCCCAGcAGGUgcgCCGCGuGGAugaacaucGCGCu -3'
miRNA:   3'- -CAGGGUC-UCCA---GGUGCuUCUu-------CGCGu -5'
14378 3' -55.8 NC_003521.1 + 53216 0.7 0.812041
Target:  5'- cUCgCCGGGGaGUCCGCGGGcGAAGCGa- -3'
miRNA:   3'- cAG-GGUCUC-CAGGUGCUU-CUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 92292 0.69 0.867625
Target:  5'- cGUCCUcGGGGaaggCgCGgGAGGAGGCGCAg -3'
miRNA:   3'- -CAGGGuCUCCa---G-GUgCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 168090 0.69 0.851897
Target:  5'- -cUgCAGAGGUCgGCGAAGAccgaggaGGCGUg -3'
miRNA:   3'- caGgGUCUCCAGgUGCUUCU-------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 66382 0.66 0.956053
Target:  5'- -gCCCAGAGGaUCAUGAaaacucuggacgAGGAGCGgGa -3'
miRNA:   3'- caGGGUCUCCaGGUGCU------------UCUUCGCgU- -5'
14378 3' -55.8 NC_003521.1 + 178443 0.67 0.94386
Target:  5'- cGUCUCcGuGGUUCcguUGAAGggGCGCGa -3'
miRNA:   3'- -CAGGGuCuCCAGGu--GCUUCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 33066 0.71 0.748854
Target:  5'- -gCCCAGcGGGUCCAUGAAGAuGGCcuucuGCAc -3'
miRNA:   3'- caGGGUC-UCCAGGUGCUUCU-UCG-----CGU- -5'
14378 3' -55.8 NC_003521.1 + 203515 0.66 0.952209
Target:  5'- -aCCCAGAGGag-ACGugcagacGGAGGCGCAg -3'
miRNA:   3'- caGGGUCUCCaggUGCu------UCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 164813 0.68 0.901403
Target:  5'- aUCCCGGAGcGcCCGCGggGGAGg--- -3'
miRNA:   3'- cAGGGUCUC-CaGGUGCuuCUUCgcgu -5'
14378 3' -55.8 NC_003521.1 + 21 0.68 0.905698
Target:  5'- gGUCCCGGGGGguggggggguguuuUUgGCGggGGggcacuaaauuGGCGCAa -3'
miRNA:   3'- -CAGGGUCUCC--------------AGgUGCuuCU-----------UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 116724 0.66 0.959681
Target:  5'- uUCCaCGGcGGUCC-CGGAGucGGCGCc -3'
miRNA:   3'- cAGG-GUCuCCAGGuGCUUCu-UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 53057 0.66 0.963098
Target:  5'- -gCCCAGcuccucgcgcAGGggCGCGAAGuuGCGCAg -3'
miRNA:   3'- caGGGUC----------UCCagGUGCUUCuuCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.