miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 3' -55.8 NC_003521.1 + 185766 0.79 0.356493
Target:  5'- -gCCUAGGGG-CCGCGAuGGAGCGCAa -3'
miRNA:   3'- caGGGUCUCCaGGUGCUuCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 157032 0.69 0.874804
Target:  5'- gGUUUCGGGGGcgCgGuCGGAGGAGCGCGg -3'
miRNA:   3'- -CAGGGUCUCCa-GgU-GCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 155314 0.68 0.894435
Target:  5'- cGUCCUGGgugagacgaccgcGGGUCC-CGGcGGggGCGCGg -3'
miRNA:   3'- -CAGGGUC-------------UCCAGGuGCU-UCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 36432 0.66 0.959681
Target:  5'- --gUCGGAGGgCCGCGGAGAcgaguuGCGCu -3'
miRNA:   3'- cagGGUCUCCaGGUGCUUCUu-----CGCGu -5'
14378 3' -55.8 NC_003521.1 + 120551 0.72 0.720135
Target:  5'- --gCCGGcGGUCC-CGggGGAGCGCc -3'
miRNA:   3'- cagGGUCuCCAGGuGCuuCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 4028 0.72 0.729792
Target:  5'- cGUUCCucAGGUCCGCGAauAGGAGCGg- -3'
miRNA:   3'- -CAGGGucUCCAGGUGCU--UCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 216522 0.71 0.785735
Target:  5'- -gCCCGGAGGgg-ACGAGGAAGCGa- -3'
miRNA:   3'- caGGGUCUCCaggUGCUUCUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 152075 0.7 0.794647
Target:  5'- uUCUCGGAGGaCCACGgcGAcGUGCGc -3'
miRNA:   3'- cAGGGUCUCCaGGUGCuuCUuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 53216 0.7 0.812041
Target:  5'- cUCgCCGGGGaGUCCGCGGGcGAAGCGa- -3'
miRNA:   3'- cAG-GGUCUC-CAGGUGCUU-CUUCGCgu -5'
14378 3' -55.8 NC_003521.1 + 92292 0.69 0.867625
Target:  5'- cGUCCUcGGGGaaggCgCGgGAGGAGGCGCAg -3'
miRNA:   3'- -CAGGGuCUCCa---G-GUgCUUCUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 92073 0.7 0.820507
Target:  5'- -aCCCAGA--UCCAUGAAGAGGCacuGCAc -3'
miRNA:   3'- caGGGUCUccAGGUGCUUCUUCG---CGU- -5'
14378 3' -55.8 NC_003521.1 + 153681 0.7 0.803418
Target:  5'- cGUCUCcGAGGUCgCAUGAAGAgcAGuCGCGa -3'
miRNA:   3'- -CAGGGuCUCCAG-GUGCUUCU--UC-GCGU- -5'
14378 3' -55.8 NC_003521.1 + 39519 0.74 0.601003
Target:  5'- -aUCCAGGGGUCgCGCGGcgAGAgcuGGCGCAg -3'
miRNA:   3'- caGGGUCUCCAG-GUGCU--UCU---UCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 87130 0.7 0.82881
Target:  5'- cGUCCCAaggagcgcGAGGUgUugGAGcGGGCGCAg -3'
miRNA:   3'- -CAGGGU--------CUCCAgGugCUUcUUCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 6760 0.72 0.690766
Target:  5'- aGUCCCAGGGcGUCCAUGGccAGGAGUa-- -3'
miRNA:   3'- -CAGGGUCUC-CAGGUGCU--UCUUCGcgu -5'
14378 3' -55.8 NC_003521.1 + 195543 0.7 0.794647
Target:  5'- -gCCCAGcggcgcccGGUCCAUGAucuccaGGAAGCGCu -3'
miRNA:   3'- caGGGUCu-------CCAGGUGCU------UCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 168090 0.69 0.851897
Target:  5'- -cUgCAGAGGUCgGCGAAGAccgaggaGGCGUg -3'
miRNA:   3'- caGgGUCUCCAGgUGCUUCU-------UCGCGu -5'
14378 3' -55.8 NC_003521.1 + 174208 0.68 0.887869
Target:  5'- -gCCCAcguuGGGGUCgCGCGGgucgggcAGggGCGCGu -3'
miRNA:   3'- caGGGU----CUCCAG-GUGCU-------UCuuCGCGU- -5'
14378 3' -55.8 NC_003521.1 + 94361 0.72 0.709429
Target:  5'- cUCCUcGAGGUCCgacucggACGAGGAGGUGUg -3'
miRNA:   3'- cAGGGuCUCCAGG-------UGCUUCUUCGCGu -5'
14378 3' -55.8 NC_003521.1 + 17230 0.71 0.758243
Target:  5'- gGUCUCGGAGG-CCGagguGGAGGCGCGc -3'
miRNA:   3'- -CAGGGUCUCCaGGUgcu-UCUUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.