miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 39010 0.7 0.912559
Target:  5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3'
miRNA:   3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 169439 0.72 0.843888
Target:  5'- --cACGCGgaCGACGGCGUCGgcgGCGGCGg -3'
miRNA:   3'- cacUGCGC--GUUGCUGUAGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 152406 0.73 0.819214
Target:  5'- -aGACGCGCAGCGcCuUCGUGCa--- -3'
miRNA:   3'- caCUGCGCGUUGCuGuAGCACGcugu -5'
14387 5' -53.4 NC_003521.1 + 184103 0.74 0.756238
Target:  5'- cGUGACGCGgcuCGACGUCGacGCGACc -3'
miRNA:   3'- -CACUGCGCguuGCUGUAGCa-CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 7740 0.69 0.948225
Target:  5'- -cGGCGCG-AGCGGCGgaggCG-GCGGCAg -3'
miRNA:   3'- caCUGCGCgUUGCUGUa---GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 186757 0.7 0.929568
Target:  5'- cUGGgGCuCGGCGGCAUCGgcggagGCGGCGg -3'
miRNA:   3'- cACUgCGcGUUGCUGUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 164517 0.72 0.843888
Target:  5'- cGUGACGCGCGACGuGCuGUCGUuGCucuucGACGa -3'
miRNA:   3'- -CACUGCGCGUUGC-UG-UAGCA-CG-----CUGU- -5'
14387 5' -53.4 NC_003521.1 + 186637 0.74 0.737156
Target:  5'- gGUGGCG-GCAAguCGACGUCGcGCGGCGg -3'
miRNA:   3'- -CACUGCgCGUU--GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 176292 0.7 0.929568
Target:  5'- -aGACGgGCGuCGGCGUCGUcGCG-CAa -3'
miRNA:   3'- caCUGCgCGUuGCUGUAGCA-CGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 109866 0.75 0.685056
Target:  5'- cGUGACGgGCGGCGGCGgggccaccaguaacUgCGUGCGACc -3'
miRNA:   3'- -CACUGCgCGUUGCUGU--------------A-GCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 27350 0.72 0.843888
Target:  5'- aUGGCGUGCAcCGGCGccgucaugaCGUGCGACGc -3'
miRNA:   3'- cACUGCGCGUuGCUGUa--------GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 98217 0.7 0.91885
Target:  5'- -cGGCGgGCAGCGGCGUgGgagGCGGgGa -3'
miRNA:   3'- caCUGCgCGUUGCUGUAgCa--CGCUgU- -5'
14387 5' -53.4 NC_003521.1 + 20170 0.72 0.843888
Target:  5'- -cGACG-GCGACGACGguccgCGUcGCGACGu -3'
miRNA:   3'- caCUGCgCGUUGCUGUa----GCA-CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 91332 0.72 0.835841
Target:  5'- -aGuCGCGCAGCGGCGUCuGUcCGGCGa -3'
miRNA:   3'- caCuGCGCGUUGCUGUAG-CAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 25637 0.73 0.78404
Target:  5'- cUGGCGCGUGaccACGACAUCaG-GCGGCAg -3'
miRNA:   3'- cACUGCGCGU---UGCUGUAG-CaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 15308 0.74 0.765624
Target:  5'- -cGACGCGCGACGGCGcCGaGCGGg- -3'
miRNA:   3'- caCUGCGCGUUGCUGUaGCaCGCUgu -5'
14387 5' -53.4 NC_003521.1 + 16031 0.68 0.959839
Target:  5'- --cACGCGCGucccgcACGACGUgGUGCGGg- -3'
miRNA:   3'- cacUGCGCGU------UGCUGUAgCACGCUgu -5'
14387 5' -53.4 NC_003521.1 + 113770 0.69 0.948225
Target:  5'- -aGGCGCGuCGACGACGgcgaCGgccagcGCGACGg -3'
miRNA:   3'- caCUGCGC-GUUGCUGUa---GCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 175437 0.69 0.939358
Target:  5'- aGUGGCGUGCu-CGGCGUaCGaucgGCGGCGc -3'
miRNA:   3'- -CACUGCGCGuuGCUGUA-GCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 92768 0.7 0.929568
Target:  5'- -cGACGCGCGACaucucguACAUgG-GCGACAg -3'
miRNA:   3'- caCUGCGCGUUGc------UGUAgCaCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.