Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14399 | 5' | -57.9 | NC_003521.1 | + | 65465 | 1.08 | 0.003625 |
Target: 5'- gCAGGAGACCCAACGCACCCUGGACGAg -3' miRNA: 3'- -GUCCUCUGGGUUGCGUGGGACCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 60697 | 0.76 | 0.395366 |
Target: 5'- gCGGGGGACCCGGgggcggcgcggguCGCAccacgccgcugcccuCCCUGGACGGg -3' miRNA: 3'- -GUCCUCUGGGUU-------------GCGU---------------GGGACCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 184767 | 0.76 | 0.409282 |
Target: 5'- -cGGAGGCCgugaucuggggCAACGCGCgCCUGGACGc -3' miRNA: 3'- guCCUCUGG-----------GUUGCGUG-GGACCUGCu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 181917 | 0.75 | 0.45192 |
Target: 5'- uCAGGGcuCCCAACGCGCCCaGGGCu- -3' miRNA: 3'- -GUCCUcuGGGUUGCGUGGGaCCUGcu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 165817 | 0.75 | 0.478638 |
Target: 5'- gGGGuccuGGCCCAcgaucacuacGCGCACCCgcucGGGCGAg -3' miRNA: 3'- gUCCu---CUGGGU----------UGCGUGGGa---CCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 112442 | 0.74 | 0.496874 |
Target: 5'- uCAGGcGGCCCAG-GCgGCCCUGGugGGc -3' miRNA: 3'- -GUCCuCUGGGUUgCG-UGGGACCugCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 234121 | 0.73 | 0.572537 |
Target: 5'- aCGGcGAGACCCAGCaGCGCUCgcGGGCGc -3' miRNA: 3'- -GUC-CUCUGGGUUG-CGUGGGa-CCUGCu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 61606 | 0.72 | 0.601688 |
Target: 5'- gCAGGGGGCgCAGCGCuCCaacGGACGGg -3' miRNA: 3'- -GUCCUCUGgGUUGCGuGGga-CCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 100839 | 0.72 | 0.615366 |
Target: 5'- gAGGAGAagcgcgaguugguguUCCAcgaGCGCcucaagagcGCCCUGGACGAg -3' miRNA: 3'- gUCCUCU---------------GGGU---UGCG---------UGGGACCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 44275 | 0.72 | 0.621236 |
Target: 5'- gAGGAGA-UCAGCGUGCaCCUGGGCGc -3' miRNA: 3'- gUCCUCUgGGUUGCGUG-GGACCUGCu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 211814 | 0.72 | 0.631024 |
Target: 5'- -cGGAGAgCagcuugAGCGCGCCCUGGugGu -3' miRNA: 3'- guCCUCUgGg-----UUGCGUGGGACCugCu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 64347 | 0.72 | 0.650596 |
Target: 5'- cCAGcugcAGGCCCuGgGCGCCCUGGACa- -3' miRNA: 3'- -GUCc---UCUGGGuUgCGUGGGACCUGcu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 155198 | 0.72 | 0.654506 |
Target: 5'- gGGGAGgugcacgaccucucgGCCCucuuCGCGCCCUcGGugGAg -3' miRNA: 3'- gUCCUC---------------UGGGuu--GCGUGGGA-CCugCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 15930 | 0.71 | 0.660365 |
Target: 5'- gCAGGAGAUUCugcugcuguGCGCcaaGCaCCUGGACGAc -3' miRNA: 3'- -GUCCUCUGGGu--------UGCG---UG-GGACCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 61296 | 0.71 | 0.689519 |
Target: 5'- gCGGGAcGACUUuGCGCGCCCgugGGACu- -3' miRNA: 3'- -GUCCU-CUGGGuUGCGUGGGa--CCUGcu -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 187665 | 0.71 | 0.69916 |
Target: 5'- gAGGGcGGCCgCGuguacuguuACGCGCCCUcGGGCGAc -3' miRNA: 3'- gUCCU-CUGG-GU---------UGCGUGGGA-CCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 78467 | 0.7 | 0.70875 |
Target: 5'- uGGGAacgcGGCCCGGCGCGCgacgugacuuaCCUcGGACGGg -3' miRNA: 3'- gUCCU----CUGGGUUGCGUG-----------GGA-CCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 156180 | 0.7 | 0.718279 |
Target: 5'- gAGGAGACCC-ACGaCAucCCCUgcauggccgaGGACGAc -3' miRNA: 3'- gUCCUCUGGGuUGC-GU--GGGA----------CCUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 138804 | 0.7 | 0.718279 |
Target: 5'- cCAGGAGAugcccUCCAugGCGCgCCUGauGGCGGc -3' miRNA: 3'- -GUCCUCU-----GGGUugCGUG-GGAC--CUGCU- -5' |
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14399 | 5' | -57.9 | NC_003521.1 | + | 20491 | 0.7 | 0.727742 |
Target: 5'- -cGGccuccAGAUgCGccACGUACCCUGGACGAa -3' miRNA: 3'- guCC-----UCUGgGU--UGCGUGGGACCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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