miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 5' -57.9 NC_003521.1 + 1160 0.68 0.847917
Target:  5'- cCGGGAG-CCaCGGCGcCGCCuacgggaCUGGACGGc -3'
miRNA:   3'- -GUCCUCuGG-GUUGC-GUGG-------GACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 3970 0.66 0.907477
Target:  5'- -cGGAgGACCCGGgGCACCgucagcgcggagguCUGGcGCGAg -3'
miRNA:   3'- guCCU-CUGGGUUgCGUGG--------------GACC-UGCU- -5'
14399 5' -57.9 NC_003521.1 + 5407 0.67 0.897204
Target:  5'- -cGGGGGCCU--CGC-CCgaGGACGAg -3'
miRNA:   3'- guCCUCUGGGuuGCGuGGgaCCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 6238 0.66 0.903322
Target:  5'- -uGGAGA-CCGGCGCuCCCgcGGACGc -3'
miRNA:   3'- guCCUCUgGGUUGCGuGGGa-CCUGCu -5'
14399 5' -57.9 NC_003521.1 + 8634 0.66 0.920384
Target:  5'- -cGGGGGCCCAugGCGugggaGGACGGu -3'
miRNA:   3'- guCCUCUGGGUugCGUggga-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 11755 0.68 0.833119
Target:  5'- ---cGGGCCCGACuCGCCCUggGGACGGc -3'
miRNA:   3'- guccUCUGGGUUGcGUGGGA--CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 13897 0.68 0.856192
Target:  5'- cCGGGGGGCCCGGCGCGgaggGGGCc- -3'
miRNA:   3'- -GUCCUCUGGGUUGCGUgggaCCUGcu -5'
14399 5' -57.9 NC_003521.1 + 15930 0.71 0.660365
Target:  5'- gCAGGAGAUUCugcugcuguGCGCcaaGCaCCUGGACGAc -3'
miRNA:   3'- -GUCCUCUGGGu--------UGCG---UG-GGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 16077 0.68 0.840985
Target:  5'- -cGGAGcCCCGACGCGCuggccgCCUGcgucGGCGAg -3'
miRNA:   3'- guCCUCuGGGUUGCGUG------GGAC----CUGCU- -5'
14399 5' -57.9 NC_003521.1 + 20318 0.7 0.755644
Target:  5'- cCAGGAGGCCaCcACGCugcugcucuCCCgGGugGAa -3'
miRNA:   3'- -GUCCUCUGG-GuUGCGu--------GGGaCCugCU- -5'
14399 5' -57.9 NC_003521.1 + 20491 0.7 0.727742
Target:  5'- -cGGccuccAGAUgCGccACGUACCCUGGACGAa -3'
miRNA:   3'- guCC-----UCUGgGU--UGCGUGGGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 25856 0.66 0.914354
Target:  5'- -cGGAGACgCGaaccACGCugugaucGCCCaGGACGAu -3'
miRNA:   3'- guCCUCUGgGU----UGCG-------UGGGaCCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 27511 0.68 0.840206
Target:  5'- aCGGGGGgcgugcgGCCCGAgGCGCCCacGGugGc -3'
miRNA:   3'- -GUCCUC-------UGGGUUgCGUGGGa-CCugCu -5'
14399 5' -57.9 NC_003521.1 + 28124 0.66 0.920384
Target:  5'- --cGAGGCCCGACccaccaGCcuuGCCCUGG-CGAc -3'
miRNA:   3'- gucCUCUGGGUUG------CG---UGGGACCuGCU- -5'
14399 5' -57.9 NC_003521.1 + 38219 0.7 0.727742
Target:  5'- gCAGGAGGCgCAGgGCGgCCUcggcGGGCGGg -3'
miRNA:   3'- -GUCCUCUGgGUUgCGUgGGA----CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 39314 0.66 0.917128
Target:  5'- cCAGGcAGcAUCgCGACGCaaucgauuaucgcugGCCCUGGugGGu -3'
miRNA:   3'- -GUCC-UC-UGG-GUUGCG---------------UGGGACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 39438 0.68 0.856192
Target:  5'- gUAGGcGGCgCCGugGCuCCCggGGACGGc -3'
miRNA:   3'- -GUCCuCUG-GGUugCGuGGGa-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 42741 0.67 0.897204
Target:  5'- aAGGGcACCguGCGCGCCgaGGGCa- -3'
miRNA:   3'- gUCCUcUGGguUGCGUGGgaCCUGcu -5'
14399 5' -57.9 NC_003521.1 + 44162 0.67 0.86352
Target:  5'- -uGGuGGACCU-GCGCACCCagcUGGACGu -3'
miRNA:   3'- guCC-UCUGGGuUGCGUGGG---ACCUGCu -5'
14399 5' -57.9 NC_003521.1 + 44275 0.72 0.621236
Target:  5'- gAGGAGA-UCAGCGUGCaCCUGGGCGc -3'
miRNA:   3'- gUCCUCUgGGUUGCGUG-GGACCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.