miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 5' -57.9 NC_003521.1 + 27511 0.68 0.840206
Target:  5'- aCGGGGGgcgugcgGCCCGAgGCGCCCacGGugGc -3'
miRNA:   3'- -GUCCUC-------UGGGUUgCGUGGGa-CCugCu -5'
14399 5' -57.9 NC_003521.1 + 20491 0.7 0.727742
Target:  5'- -cGGccuccAGAUgCGccACGUACCCUGGACGAa -3'
miRNA:   3'- guCC-----UCUGgGU--UGCGUGGGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 49788 0.7 0.746433
Target:  5'- -cGGAGcgccaccuuGCCCAACGUagaGgCCUGGAUGAg -3'
miRNA:   3'- guCCUC---------UGGGUUGCG---UgGGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 146789 0.69 0.782649
Target:  5'- gCAGGAGACggaCGAUGauccggaCCUGGACGAc -3'
miRNA:   3'- -GUCCUCUGg--GUUGCgug----GGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 197449 0.69 0.782649
Target:  5'- cCAGGcGGCgCCAGCGCauGCUCUGG-CGGa -3'
miRNA:   3'- -GUCCuCUG-GGUUGCG--UGGGACCuGCU- -5'
14399 5' -57.9 NC_003521.1 + 105039 0.69 0.800047
Target:  5'- gAGGAcGGCCCGcccguGCGCgagcaGCCCcagGGGCGAu -3'
miRNA:   3'- gUCCU-CUGGGU-----UGCG-----UGGGa--CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 142393 0.68 0.81689
Target:  5'- cCAGGAGGCCgCGGCccuggcCGCCCUGGccaACGu -3'
miRNA:   3'- -GUCCUCUGG-GUUGc-----GUGGGACC---UGCu -5'
14399 5' -57.9 NC_003521.1 + 90006 0.68 0.824272
Target:  5'- -cGGGGACacguuguuucgguCCAGCGCcCCCUGG-CGGc -3'
miRNA:   3'- guCCUCUG-------------GGUUGCGuGGGACCuGCU- -5'
14399 5' -57.9 NC_003521.1 + 128440 0.68 0.825084
Target:  5'- cCAGGAuGACCgAGCGCucGCCCaGG-CGGa -3'
miRNA:   3'- -GUCCU-CUGGgUUGCG--UGGGaCCuGCU- -5'
14399 5' -57.9 NC_003521.1 + 238447 0.7 0.727742
Target:  5'- gCAGGAGGCgCAGgGCGgCCUcggcGGGCGGg -3'
miRNA:   3'- -GUCCUCUGgGUUgCGUgGGA----CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 156180 0.7 0.718279
Target:  5'- gAGGAGACCC-ACGaCAucCCCUgcauggccgaGGACGAc -3'
miRNA:   3'- gUCCUCUGGGuUGC-GU--GGGA----------CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 138804 0.7 0.718279
Target:  5'- cCAGGAGAugcccUCCAugGCGCgCCUGauGGCGGc -3'
miRNA:   3'- -GUCCUCU-----GGGUugCGUG-GGAC--CUGCU- -5'
14399 5' -57.9 NC_003521.1 + 60697 0.76 0.395366
Target:  5'- gCGGGGGACCCGGgggcggcgcggguCGCAccacgccgcugcccuCCCUGGACGGg -3'
miRNA:   3'- -GUCCUCUGGGUU-------------GCGU---------------GGGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 181917 0.75 0.45192
Target:  5'- uCAGGGcuCCCAACGCGCCCaGGGCu- -3'
miRNA:   3'- -GUCCUcuGGGUUGCGUGGGaCCUGcu -5'
14399 5' -57.9 NC_003521.1 + 165817 0.75 0.478638
Target:  5'- gGGGuccuGGCCCAcgaucacuacGCGCACCCgcucGGGCGAg -3'
miRNA:   3'- gUCCu---CUGGGU----------UGCGUGGGa---CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 112442 0.74 0.496874
Target:  5'- uCAGGcGGCCCAG-GCgGCCCUGGugGGc -3'
miRNA:   3'- -GUCCuCUGGGUUgCG-UGGGACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 234121 0.73 0.572537
Target:  5'- aCGGcGAGACCCAGCaGCGCUCgcGGGCGc -3'
miRNA:   3'- -GUC-CUCUGGGUUG-CGUGGGa-CCUGCu -5'
14399 5' -57.9 NC_003521.1 + 61606 0.72 0.601688
Target:  5'- gCAGGGGGCgCAGCGCuCCaacGGACGGg -3'
miRNA:   3'- -GUCCUCUGgGUUGCGuGGga-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 44275 0.72 0.621236
Target:  5'- gAGGAGA-UCAGCGUGCaCCUGGGCGc -3'
miRNA:   3'- gUCCUCUgGGUUGCGUG-GGACCUGCu -5'
14399 5' -57.9 NC_003521.1 + 64347 0.72 0.650596
Target:  5'- cCAGcugcAGGCCCuGgGCGCCCUGGACa- -3'
miRNA:   3'- -GUCc---UCUGGGuUgCGUGGGACCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.