miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1441 5' -57 NC_001335.1 + 5622 1.12 0.000363
Target:  5'- gGCACCGUACGCAGCCAGCGCAAGGACg -3'
miRNA:   3'- -CGUGGCAUGCGUCGGUCGCGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 52080 0.75 0.181697
Target:  5'- cGCAUCGU-CGCAuGUCAGCGCGGguauGGGCg -3'
miRNA:   3'- -CGUGGCAuGCGU-CGGUCGCGUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 5688 0.74 0.196442
Target:  5'- gGCugCGUACGgugccugccgcuaCGGCCGGCGCAccGGaGACu -3'
miRNA:   3'- -CGugGCAUGC-------------GUCGGUCGCGU--UC-CUG- -5'
1441 5' -57 NC_001335.1 + 743 0.72 0.249621
Target:  5'- aGCGCCGaccugcuuUACGCGGUCgagaaGGCGCucggGGGACg -3'
miRNA:   3'- -CGUGGC--------AUGCGUCGG-----UCGCGu---UCCUG- -5'
1441 5' -57 NC_001335.1 + 23121 0.72 0.25614
Target:  5'- aGCACCGUugGCcguGCCGGCGgucaGAGcGAa -3'
miRNA:   3'- -CGUGGCAugCGu--CGGUCGCg---UUC-CUg -5'
1441 5' -57 NC_001335.1 + 6048 0.72 0.269595
Target:  5'- cGCAgauCCGUACGCggacuucgcgcuGGCCGGCuacucGCAGGGAg -3'
miRNA:   3'- -CGU---GGCAUGCG------------UCGGUCG-----CGUUCCUg -5'
1441 5' -57 NC_001335.1 + 24714 0.71 0.321167
Target:  5'- uGCGCCGUgGCGCuuCCcGCGUggGGAa -3'
miRNA:   3'- -CGUGGCA-UGCGucGGuCGCGuuCCUg -5'
1441 5' -57 NC_001335.1 + 34037 0.7 0.352958
Target:  5'- -aGCCGUACGCaacggagAGCCGGgGauguGGGACu -3'
miRNA:   3'- cgUGGCAUGCG-------UCGGUCgCgu--UCCUG- -5'
1441 5' -57 NC_001335.1 + 7076 0.7 0.362319
Target:  5'- uCACCGU-CGCGGCCGucaGCcAGGACc -3'
miRNA:   3'- cGUGGCAuGCGUCGGUcg-CGuUCCUG- -5'
1441 5' -57 NC_001335.1 + 41402 0.7 0.370976
Target:  5'- aCGCCGacuucccggUGcCGgGGCCGGCGCAgaccAGGACu -3'
miRNA:   3'- cGUGGC---------AU-GCgUCGGUCGCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 47129 0.69 0.398699
Target:  5'- cGCACCGUAacCGCaAGCgAGagaugaagcgccccgGCAAGGGCa -3'
miRNA:   3'- -CGUGGCAU--GCG-UCGgUCg--------------CGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 2795 0.69 0.406992
Target:  5'- -gGCCGcACGCA-CCAGCucguCAAGGACa -3'
miRNA:   3'- cgUGGCaUGCGUcGGUCGc---GUUCCUG- -5'
1441 5' -57 NC_001335.1 + 46353 0.69 0.406992
Target:  5'- uGCGCCugGCGCagAGCCAGCGCAGc--- -3'
miRNA:   3'- -CGUGGcaUGCG--UCGGUCGCGUUccug -5'
1441 5' -57 NC_001335.1 + 34273 0.69 0.416333
Target:  5'- gGCGgUGUGCGcCGGUCGGCGC--GGAUg -3'
miRNA:   3'- -CGUgGCAUGC-GUCGGUCGCGuuCCUG- -5'
1441 5' -57 NC_001335.1 + 17030 0.69 0.425804
Target:  5'- aGCAUCGUGCcgaGCGugcucGCCAGCGUcuGGAa -3'
miRNA:   3'- -CGUGGCAUG---CGU-----CGGUCGCGuuCCUg -5'
1441 5' -57 NC_001335.1 + 4713 0.68 0.432509
Target:  5'- cCGCCGUACGCGuaggggagaccgucGCgAGCGCGGgccaugucguGGACc -3'
miRNA:   3'- cGUGGCAUGCGU--------------CGgUCGCGUU----------CCUG- -5'
1441 5' -57 NC_001335.1 + 17405 0.68 0.434436
Target:  5'- cGCGCCagcaACGCugaccagAGCCuGCGCcAGGGGCa -3'
miRNA:   3'- -CGUGGca--UGCG-------UCGGuCGCG-UUCCUG- -5'
1441 5' -57 NC_001335.1 + 25732 0.68 0.435401
Target:  5'- aGCAUCGaaaGUAGCCAGauCAGGGAUg -3'
miRNA:   3'- -CGUGGCaugCGUCGGUCgcGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 26569 0.68 0.445123
Target:  5'- cGCGCUccACGCGGaUCAGC-CGGGGACc -3'
miRNA:   3'- -CGUGGcaUGCGUC-GGUCGcGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 51750 0.68 0.473981
Target:  5'- cGCGCCaUAucUGCAGCUAGgGCAccaauuugcgauuAGGGCu -3'
miRNA:   3'- -CGUGGcAU--GCGUCGGUCgCGU-------------UCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.