Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1441 | 5' | -57 | NC_001335.1 | + | 373 | 0.67 | 0.537496 |
Target: 5'- cGCGCCaGUGCGCGGCCcuauaGAGGGg -3' miRNA: 3'- -CGUGG-CAUGCGUCGGucgcgUUCCUg -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 743 | 0.72 | 0.249621 |
Target: 5'- aGCGCCGaccugcuuUACGCGGUCgagaaGGCGCucggGGGACg -3' miRNA: 3'- -CGUGGC--------AUGCGUCGG-----UCGCGu---UCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 2795 | 0.69 | 0.406992 |
Target: 5'- -gGCCGcACGCA-CCAGCucguCAAGGACa -3' miRNA: 3'- cgUGGCaUGCGUcGGUCGc---GUUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 4713 | 0.68 | 0.432509 |
Target: 5'- cCGCCGUACGCGuaggggagaccgucGCgAGCGCGGgccaugucguGGACc -3' miRNA: 3'- cGUGGCAUGCGU--------------CGgUCGCGUU----------CCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 5622 | 1.12 | 0.000363 |
Target: 5'- gGCACCGUACGCAGCCAGCGCAAGGACg -3' miRNA: 3'- -CGUGGCAUGCGUCGGUCGCGUUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 5688 | 0.74 | 0.196442 |
Target: 5'- gGCugCGUACGgugccugccgcuaCGGCCGGCGCAccGGaGACu -3' miRNA: 3'- -CGugGCAUGC-------------GUCGGUCGCGU--UC-CUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 5929 | 0.66 | 0.602592 |
Target: 5'- uGUGCCGUggACGgugaaCAGCCAGgGCuugcucauGGACg -3' miRNA: 3'- -CGUGGCA--UGC-----GUCGGUCgCGuu------CCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 6048 | 0.72 | 0.269595 |
Target: 5'- cGCAgauCCGUACGCggacuucgcgcuGGCCGGCuacucGCAGGGAg -3' miRNA: 3'- -CGU---GGCAUGCG------------UCGGUCG-----CGUUCCUg -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 7076 | 0.7 | 0.362319 |
Target: 5'- uCACCGU-CGCGGCCGucaGCcAGGACc -3' miRNA: 3'- cGUGGCAuGCGUCGGUcg-CGuUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 16261 | 0.66 | 0.580702 |
Target: 5'- gGCGCUG-GCGUAGUC-GCGCucggcauGGACg -3' miRNA: 3'- -CGUGGCaUGCGUCGGuCGCGuu-----CCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 16318 | 0.67 | 0.495452 |
Target: 5'- aGCGCCGgcuccgaACGCAGaCAGCaGCGAcGGCa -3' miRNA: 3'- -CGUGGCa------UGCGUCgGUCG-CGUUcCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 16985 | 0.68 | 0.481088 |
Target: 5'- aGCGCCGUGacgaugggagcgaGCuguguGcCCAGCGUcccGAGGACg -3' miRNA: 3'- -CGUGGCAUg------------CGu----C-GGUCGCG---UUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 17030 | 0.69 | 0.425804 |
Target: 5'- aGCAUCGUGCcgaGCGugcucGCCAGCGUcuGGAa -3' miRNA: 3'- -CGUGGCAUG---CGU-----CGGUCGCGuuCCUg -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 17221 | 0.68 | 0.474993 |
Target: 5'- -gGCCGagggcCGUcGCCAGCGCcGGGAUg -3' miRNA: 3'- cgUGGCau---GCGuCGGUCGCGuUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 17405 | 0.68 | 0.434436 |
Target: 5'- cGCGCCagcaACGCugaccagAGCCuGCGCcAGGGGCa -3' miRNA: 3'- -CGUGGca--UGCG-------UCGGuCGCG-UUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 17959 | 0.66 | 0.59163 |
Target: 5'- cGCugCGaAC-CAGCUcgaccagauccaGGCGCAgaAGGACa -3' miRNA: 3'- -CGugGCaUGcGUCGG------------UCGCGU--UCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 20255 | 0.68 | 0.485171 |
Target: 5'- -gGCCG-GCGaCGGCCAG-GuCGAGGGCg -3' miRNA: 3'- cgUGGCaUGC-GUCGGUCgC-GUUCCUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 20606 | 0.67 | 0.548206 |
Target: 5'- cGCGCCGaGCGCGGCgAGCugGCuguugaugaacGAGGuCa -3' miRNA: 3'- -CGUGGCaUGCGUCGgUCG--CG-----------UUCCuG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 22592 | 0.66 | 0.580702 |
Target: 5'- aCGCUGgcgGCGUGGCCGGCGgugacgacuuCGAGcGACu -3' miRNA: 3'- cGUGGCa--UGCGUCGGUCGC----------GUUC-CUG- -5' |
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1441 | 5' | -57 | NC_001335.1 | + | 23121 | 0.72 | 0.25614 |
Target: 5'- aGCACCGUugGCcguGCCGGCGgucaGAGcGAa -3' miRNA: 3'- -CGUGGCAugCGu--CGGUCGCg---UUC-CUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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