miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1441 5' -57 NC_001335.1 + 5622 1.12 0.000363
Target:  5'- gGCACCGUACGCAGCCAGCGCAAGGACg -3'
miRNA:   3'- -CGUGGCAUGCGUCGGUCGCGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 33053 0.66 0.558982
Target:  5'- uCGCuCGUACGgAGCCuGCGgGAagcuGGACu -3'
miRNA:   3'- cGUG-GCAUGCgUCGGuCGCgUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 20255 0.68 0.485171
Target:  5'- -gGCCG-GCGaCGGCCAG-GuCGAGGGCg -3'
miRNA:   3'- cgUGGCaUGC-GUCGGUCgC-GUUCCUG- -5'
1441 5' -57 NC_001335.1 + 26569 0.68 0.445123
Target:  5'- cGCGCUccACGCGGaUCAGC-CGGGGACc -3'
miRNA:   3'- -CGUGGcaUGCGUC-GGUCGcGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 2795 0.69 0.406992
Target:  5'- -gGCCGcACGCA-CCAGCucguCAAGGACa -3'
miRNA:   3'- cgUGGCaUGCGUcGGUCGc---GUUCCUG- -5'
1441 5' -57 NC_001335.1 + 41402 0.7 0.370976
Target:  5'- aCGCCGacuucccggUGcCGgGGCCGGCGCAgaccAGGACu -3'
miRNA:   3'- cGUGGC---------AU-GCgUCGGUCGCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 47961 0.66 0.606984
Target:  5'- aGCACUGguccgcugucggcgACGguGCagucgacacCAGCGCA-GGACa -3'
miRNA:   3'- -CGUGGCa-------------UGCguCG---------GUCGCGUuCCUG- -5'
1441 5' -57 NC_001335.1 + 17959 0.66 0.59163
Target:  5'- cGCugCGaAC-CAGCUcgaccagauccaGGCGCAgaAGGACa -3'
miRNA:   3'- -CGugGCaUGcGUCGG------------UCGCGU--UCCUG- -5'
1441 5' -57 NC_001335.1 + 22592 0.66 0.580702
Target:  5'- aCGCUGgcgGCGUGGCCGGCGgugacgacuuCGAGcGACu -3'
miRNA:   3'- cGUGGCa--UGCGUCGGUCGC----------GUUC-CUG- -5'
1441 5' -57 NC_001335.1 + 373 0.67 0.537496
Target:  5'- cGCGCCaGUGCGCGGCCcuauaGAGGGg -3'
miRNA:   3'- -CGUGG-CAUGCGUCGGucgcgUUCCUg -5'
1441 5' -57 NC_001335.1 + 46353 0.69 0.406992
Target:  5'- uGCGCCugGCGCagAGCCAGCGCAGc--- -3'
miRNA:   3'- -CGUGGcaUGCG--UCGGUCGCGUUccug -5'
1441 5' -57 NC_001335.1 + 52080 0.75 0.181697
Target:  5'- cGCAUCGU-CGCAuGUCAGCGCGGguauGGGCg -3'
miRNA:   3'- -CGUGGCAuGCGU-CGGUCGCGUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 26137 0.66 0.580702
Target:  5'- aGUACCuGUcuCGCGGCCAGaaccCGCGccucGGGGCc -3'
miRNA:   3'- -CGUGG-CAu-GCGUCGGUC----GCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 6048 0.72 0.269595
Target:  5'- cGCAgauCCGUACGCggacuucgcgcuGGCCGGCuacucGCAGGGAg -3'
miRNA:   3'- -CGU---GGCAUGCG------------UCGGUCG-----CGUUCCUg -5'
1441 5' -57 NC_001335.1 + 49341 0.67 0.49442
Target:  5'- cGCAgCGUugGCAGUCccacGCGCuguaaccAGGGAUc -3'
miRNA:   3'- -CGUgGCAugCGUCGGu---CGCG-------UUCCUG- -5'
1441 5' -57 NC_001335.1 + 16261 0.66 0.580702
Target:  5'- gGCGCUG-GCGUAGUC-GCGCucggcauGGACg -3'
miRNA:   3'- -CGUGGCaUGCGUCGGuCGCGuu-----CCUG- -5'
1441 5' -57 NC_001335.1 + 7076 0.7 0.362319
Target:  5'- uCACCGU-CGCGGCCGucaGCcAGGACc -3'
miRNA:   3'- cGUGGCAuGCGUCGGUcg-CGuUCCUG- -5'
1441 5' -57 NC_001335.1 + 36660 0.66 0.569816
Target:  5'- aGCugaCGUACuCGaCCAGCGCcGGGGCg -3'
miRNA:   3'- -CGug-GCAUGcGUcGGUCGCGuUCCUG- -5'
1441 5' -57 NC_001335.1 + 17030 0.69 0.425804
Target:  5'- aGCAUCGUGCcgaGCGugcucGCCAGCGUcuGGAa -3'
miRNA:   3'- -CGUGGCAUG---CGU-----CGGUCGCGuuCCUg -5'
1441 5' -57 NC_001335.1 + 4713 0.68 0.432509
Target:  5'- cCGCCGUACGCGuaggggagaccgucGCgAGCGCGGgccaugucguGGACc -3'
miRNA:   3'- cGUGGCAUGCGU--------------CGgUCGCGUU----------CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.