miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 52237 0.76 0.357155
Target:  5'- gGCGGGCUAcAGUUgGGCAGCGgcAGGCg -3'
miRNA:   3'- aCGCCCGGU-UCAGgUCGUUGC--UCCGa -5'
14437 5' -58.7 NC_003521.1 + 58756 0.76 0.342139
Target:  5'- cUGCGGGCUgAGGUCCAGCcacuGCaGGGCg -3'
miRNA:   3'- -ACGCCCGG-UUCAGGUCGu---UGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 5824 0.76 0.342139
Target:  5'- gGUGGuGCCGGGUcCCGGCGAcCGGGGCc -3'
miRNA:   3'- aCGCC-CGGUUCA-GGUCGUU-GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 154659 0.77 0.299864
Target:  5'- cGCuGGCCGAGgCCGGCAGCGAGacGCUg -3'
miRNA:   3'- aCGcCCGGUUCaGGUCGUUGCUC--CGA- -5'
14437 5' -58.7 NC_003521.1 + 70304 0.77 0.299864
Target:  5'- aGCGGuG-CAGGUcgcCCAGCAGCGAGGCg -3'
miRNA:   3'- aCGCC-CgGUUCA---GGUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 145873 0.71 0.578644
Target:  5'- gGCGGGCggcgccgacgaCGAGgccgCCGGCGGCGGGaGCa -3'
miRNA:   3'- aCGCCCG-----------GUUCa---GGUCGUUGCUC-CGa -5'
14437 5' -58.7 NC_003521.1 + 32385 0.71 0.592359
Target:  5'- cGCGuGGCCAGGUCCucgggcgugcgacacAGCAGCccguGGCg -3'
miRNA:   3'- aCGC-CCGGUUCAGG---------------UCGUUGcu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 119786 0.69 0.734942
Target:  5'- cUGCGGuCCAccuUCCGGCGccaGCGGGGCg -3'
miRNA:   3'- -ACGCCcGGUuc-AGGUCGU---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 168562 0.69 0.72926
Target:  5'- gGCGGGCUgcGGGUaagguggcggcugacCCAGCGGCGgcauggacauGGGCUg -3'
miRNA:   3'- aCGCCCGG--UUCA---------------GGUCGUUGC----------UCCGA- -5'
14437 5' -58.7 NC_003521.1 + 125889 0.69 0.715897
Target:  5'- -aCGGGuCCAcGcCCAGCAugcACGAGGCc -3'
miRNA:   3'- acGCCC-GGUuCaGGUCGU---UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 115373 0.69 0.696585
Target:  5'- cGCuGGCCAGGgCCGGCAuguGCaGGGCg -3'
miRNA:   3'- aCGcCCGGUUCaGGUCGU---UGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 34177 0.69 0.696585
Target:  5'- cGCGGGCCAAcuuGaCCAGCuuauCGuGGCc -3'
miRNA:   3'- aCGCCCGGUU---CaGGUCGuu--GCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 166868 0.69 0.695614
Target:  5'- gGCGGGCgcaggucguacauCAAGUCCgcgGGCGcGCGGGGUa -3'
miRNA:   3'- aCGCCCG-------------GUUCAGG---UCGU-UGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 59434 0.7 0.68685
Target:  5'- aGCGGcGCCGccgCCGGCAGCGAG-CUc -3'
miRNA:   3'- aCGCC-CGGUucaGGUCGUUGCUCcGA- -5'
14437 5' -58.7 NC_003521.1 + 117490 0.7 0.657423
Target:  5'- cGaCGGGCCu-GUCCGGCGggGCGuacGGCg -3'
miRNA:   3'- aC-GCCCGGuuCAGGUCGU--UGCu--CCGa -5'
14437 5' -58.7 NC_003521.1 + 34140 0.7 0.657423
Target:  5'- aGCaGGGCCAGGcCCAcGCGcACGaAGGCc -3'
miRNA:   3'- aCG-CCCGGUUCaGGU-CGU-UGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 35218 0.7 0.647566
Target:  5'- cGCGGGUCGGaUCgAGCGuccuCGGGGCg -3'
miRNA:   3'- aCGCCCGGUUcAGgUCGUu---GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 135217 0.7 0.637698
Target:  5'- aGUGGGCCucGUCCaccAGCAGC-AGGUg -3'
miRNA:   3'- aCGCCCGGuuCAGG---UCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 221802 0.71 0.617956
Target:  5'- gGCGGGCaUggGcUCCGuCGGCGGGGCg -3'
miRNA:   3'- aCGCCCG-GuuC-AGGUcGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 131095 0.71 0.598254
Target:  5'- cGCGGGC----UCCGGaCGGCGGGGCg -3'
miRNA:   3'- aCGCCCGguucAGGUC-GUUGCUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.