miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14448 3' -57.8 NC_003521.1 + 5123 0.66 0.92415
Target:  5'- gGGcUACGCCCCCUguuccucuucuucggGGUcggGGGGUUcauagAUACGa -3'
miRNA:   3'- -CC-AUGCGGGGGA---------------CCG---UCCCGA-----UAUGU- -5'
14448 3' -57.8 NC_003521.1 + 39844 0.66 0.922036
Target:  5'- -cUugGCCUCCggcguggGGCuugcacgugguGGGGUUGUGCAc -3'
miRNA:   3'- ccAugCGGGGGa------CCG-----------UCCCGAUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 240071 0.66 0.922036
Target:  5'- -cUugGCCUCCggcguggGGCuugcacgugguGGGGUUGUGCAc -3'
miRNA:   3'- ccAugCGGGGGa------CCG-----------UCCCGAUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 226378 0.66 0.922036
Target:  5'- cGGcugACGCCgCC--GCAGGGCcgUGUGCAc -3'
miRNA:   3'- -CCa--UGCGGgGGacCGUCCCG--AUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 206624 0.66 0.916594
Target:  5'- -cUACGCCgCCCUGGU-GGGCc--ACGa -3'
miRNA:   3'- ccAUGCGG-GGGACCGuCCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 27104 0.66 0.916594
Target:  5'- --gGCGCCgUCUGGCuGGGCa----- -3'
miRNA:   3'- ccaUGCGGgGGACCGuCCCGauaugu -5'
14448 3' -57.8 NC_003521.1 + 60505 0.66 0.910931
Target:  5'- uGGUAgGCUCCC-GGgAGGaGCUGcACGg -3'
miRNA:   3'- -CCAUgCGGGGGaCCgUCC-CGAUaUGU- -5'
14448 3' -57.8 NC_003521.1 + 162230 0.66 0.910931
Target:  5'- uGGUaGCGCCgacggCgCUGGCGGGGUgg-GCGu -3'
miRNA:   3'- -CCA-UGCGG-----GgGACCGUCCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 119823 0.66 0.910931
Target:  5'- uGGUGCGCacgCCCCagUGGUA-GGCgGUGCGu -3'
miRNA:   3'- -CCAUGCG---GGGG--ACCGUcCCGaUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 138821 0.66 0.910931
Target:  5'- uGGcGCGCCUgaUGGCGGcGGCUAcggccUGCGg -3'
miRNA:   3'- -CCaUGCGGGggACCGUC-CCGAU-----AUGU- -5'
14448 3' -57.8 NC_003521.1 + 217190 0.66 0.90505
Target:  5'- cGGUccAUGCCgCCCaGGCAGgccacGGCgGUGCAg -3'
miRNA:   3'- -CCA--UGCGG-GGGaCCGUC-----CCGaUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 25260 0.66 0.90505
Target:  5'- cGGcGCGgUCCCUGGCcuGGgUGUACc -3'
miRNA:   3'- -CCaUGCgGGGGACCGucCCgAUAUGu -5'
14448 3' -57.8 NC_003521.1 + 148974 0.66 0.89895
Target:  5'- uGGUcCGCCgCCCUGGaGGGGggAUGgGa -3'
miRNA:   3'- -CCAuGCGG-GGGACCgUCCCgaUAUgU- -5'
14448 3' -57.8 NC_003521.1 + 209543 0.66 0.89895
Target:  5'- cGGuUAUGCgCCC-GGCGGGGUg--GCGg -3'
miRNA:   3'- -CC-AUGCGgGGGaCCGUCCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 68241 0.66 0.89895
Target:  5'- cGGUACGUUCaCCUGGCGGuGCg--ACc -3'
miRNA:   3'- -CCAUGCGGG-GGACCGUCcCGauaUGu -5'
14448 3' -57.8 NC_003521.1 + 139715 0.67 0.88611
Target:  5'- ---cCGCCCCCUcGCGGGGUuucgucaucUAUAUAu -3'
miRNA:   3'- ccauGCGGGGGAcCGUCCCG---------AUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 68048 0.67 0.88611
Target:  5'- uGGUccgcgGCGCCCCCggUGGCAgccagaaugccGGGCcccGCAa -3'
miRNA:   3'- -CCA-----UGCGGGGG--ACCGU-----------CCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 149649 0.67 0.879376
Target:  5'- aGGUGC-UCUCCUGGUGcGGGCUGcccgACAu -3'
miRNA:   3'- -CCAUGcGGGGGACCGU-CCCGAUa---UGU- -5'
14448 3' -57.8 NC_003521.1 + 115247 0.67 0.872437
Target:  5'- uGUGCGCCgCCgUGGUcgGGGGCagcAUGCc -3'
miRNA:   3'- cCAUGCGG-GGgACCG--UCCCGa--UAUGu -5'
14448 3' -57.8 NC_003521.1 + 205338 0.67 0.872437
Target:  5'- --gGCGCCUCCUcGGCGGcGGCagcUGCGc -3'
miRNA:   3'- ccaUGCGGGGGA-CCGUC-CCGau-AUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.