miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 5' -59.6 NC_003521.1 + 209411 0.66 0.838553
Target:  5'- -gGCGCACA----GGGCACCCCAa-- -3'
miRNA:   3'- uaUGCGUGUagggCCCGUGGGGUcua -5'
14452 5' -59.6 NC_003521.1 + 164791 0.66 0.833777
Target:  5'- -cGgGCACGggucgucggggacgaUCCCGGaGCGCCCgCGGGg -3'
miRNA:   3'- uaUgCGUGU---------------AGGGCC-CGUGGG-GUCUa -5'
14452 5' -59.6 NC_003521.1 + 101017 0.66 0.822398
Target:  5'- -gGgGCGCGUCCuggCGGGCACgCCCGu-- -3'
miRNA:   3'- uaUgCGUGUAGG---GCCCGUG-GGGUcua -5'
14452 5' -59.6 NC_003521.1 + 213299 0.66 0.822398
Target:  5'- cUACGC-CA-CCgUGGGCGCCUCGGGc -3'
miRNA:   3'- uAUGCGuGUaGG-GCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 181188 0.66 0.814076
Target:  5'- -aGCGCACGaaguccaCCCGGG-GCUCCAGGa -3'
miRNA:   3'- uaUGCGUGUa------GGGCCCgUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 128793 0.66 0.814076
Target:  5'- aGUACGCGg--UCgGGGCACCgCAGAa -3'
miRNA:   3'- -UAUGCGUguaGGgCCCGUGGgGUCUa -5'
14452 5' -59.6 NC_003521.1 + 64854 0.66 0.8056
Target:  5'- -cACG-GCgAUCUCGGGUACCCCGGc- -3'
miRNA:   3'- uaUGCgUG-UAGGGCCCGUGGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 193238 0.66 0.796977
Target:  5'- -gGCGggaGCGcCUgGGGUACCCCGGAUa -3'
miRNA:   3'- uaUGCg--UGUaGGgCCCGUGGGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 63056 0.66 0.796977
Target:  5'- ---aGUACAUCuuGGGCGCCaCGGGc -3'
miRNA:   3'- uaugCGUGUAGggCCCGUGGgGUCUa -5'
14452 5' -59.6 NC_003521.1 + 23231 0.66 0.796977
Target:  5'- --cUGCugGUCCgGGGCGgaCCCGGGg -3'
miRNA:   3'- uauGCGugUAGGgCCCGUg-GGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 217384 0.67 0.779323
Target:  5'- -cAgGCACA-CCgUGGGCACCgCCAGGc -3'
miRNA:   3'- uaUgCGUGUaGG-GCCCGUGG-GGUCUa -5'
14452 5' -59.6 NC_003521.1 + 150731 0.67 0.770308
Target:  5'- cGUGgGcCACGUCCUGggccGGCugCCCGGAc -3'
miRNA:   3'- -UAUgC-GUGUAGGGC----CCGugGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 179324 0.67 0.770308
Target:  5'- -cGCGCACGUCguUCGGGUGCCCUc--- -3'
miRNA:   3'- uaUGCGUGUAG--GGCCCGUGGGGucua -5'
14452 5' -59.6 NC_003521.1 + 178800 0.67 0.770308
Target:  5'- -gACGgGCc-CCCGGGCACCUCGuGGUa -3'
miRNA:   3'- uaUGCgUGuaGGGCCCGUGGGGU-CUA- -5'
14452 5' -59.6 NC_003521.1 + 72796 0.67 0.770308
Target:  5'- -gAUGUGgGUCUCGGGCGCCaCCAaGAa -3'
miRNA:   3'- uaUGCGUgUAGGGCCCGUGG-GGU-CUa -5'
14452 5' -59.6 NC_003521.1 + 196627 0.67 0.770308
Target:  5'- -gAUGCGCGUCCgcaGGGUGCCCgAGu- -3'
miRNA:   3'- uaUGCGUGUAGGg--CCCGUGGGgUCua -5'
14452 5' -59.6 NC_003521.1 + 163211 0.67 0.761178
Target:  5'- -gGCGC-CGUCaCGGGCGCgCCCGGu- -3'
miRNA:   3'- uaUGCGuGUAGgGCCCGUG-GGGUCua -5'
14452 5' -59.6 NC_003521.1 + 77604 0.67 0.751941
Target:  5'- -aACcCACGUCaCCGGGCGCgCCCGuGAc -3'
miRNA:   3'- uaUGcGUGUAG-GGCCCGUG-GGGU-CUa -5'
14452 5' -59.6 NC_003521.1 + 136881 0.67 0.751941
Target:  5'- ---aGCGCAUCUCGGGC-UCgCAGAUg -3'
miRNA:   3'- uaugCGUGUAGGGCCCGuGGgGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 174255 0.68 0.733181
Target:  5'- -gACGCACGUUgCGcuGGCGCgCCAGGUc -3'
miRNA:   3'- uaUGCGUGUAGgGC--CCGUGgGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.