miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 92975 1.07 0.004367
Target:  5'- gCCCCCCAGCAACCCCGAUCGUACCAUc -3'
miRNA:   3'- -GGGGGGUCGUUGGGGCUAGCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 134943 0.8 0.240884
Target:  5'- gCCCCCGGCAucugcGCCCUGAUCGUgggcacgcGCCAc -3'
miRNA:   3'- gGGGGGUCGU-----UGGGGCUAGCA--------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 111042 0.77 0.343947
Target:  5'- gCCCCaGGCGACCCUcgucuucguGGUCGUACCAUa -3'
miRNA:   3'- gGGGGgUCGUUGGGG---------CUAGCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 56931 0.75 0.457372
Target:  5'- gCCUCCAGC-ACCUCGGccUCGUGCCGc -3'
miRNA:   3'- gGGGGGUCGuUGGGGCU--AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 236285 0.74 0.493304
Target:  5'- aCUCCCCGGgGACCCUGcgCGUgaucGCCGUu -3'
miRNA:   3'- -GGGGGGUCgUUGGGGCuaGCA----UGGUA- -5'
14453 5' -58.3 NC_003521.1 + 6053 0.73 0.539932
Target:  5'- -gCCCCAGCGGCCCCGcagggCGUgaucacGCCAg -3'
miRNA:   3'- ggGGGGUCGUUGGGGCua---GCA------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 85647 0.73 0.568619
Target:  5'- cCCCCCCGGCAGCCgCGGcC--GCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGGgGCUaGcaUGGUa -5'
14453 5' -58.3 NC_003521.1 + 234352 0.72 0.57827
Target:  5'- -aUCCCAcGCcauGCCCUGGUCGUGCCGg -3'
miRNA:   3'- ggGGGGU-CGu--UGGGGCUAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 92664 0.72 0.597672
Target:  5'- uCCCCCCggucgAGCAGCCUCGGcgagGUGCCGg -3'
miRNA:   3'- -GGGGGG-----UCGUUGGGGCUag--CAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 141146 0.72 0.60741
Target:  5'- aCCUUCGGCAACCCCGugcacCGgGCCAUg -3'
miRNA:   3'- gGGGGGUCGUUGGGGCua---GCaUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 234454 0.72 0.60741
Target:  5'- gCCCCUCcGCGACCCCGAcCGgcCCc- -3'
miRNA:   3'- -GGGGGGuCGUUGGGGCUaGCauGGua -5'
14453 5' -58.3 NC_003521.1 + 184573 0.72 0.615213
Target:  5'- gCCUgCCGGCcugccucAGCCCCGAcauggcaUCGUGCCAc -3'
miRNA:   3'- -GGGgGGUCG-------UUGGGGCU-------AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 92440 0.72 0.626931
Target:  5'- aCCCCCCAGCcuccccgcACCCCGcUCGgcuUGCCc- -3'
miRNA:   3'- -GGGGGGUCGu-------UGGGGCuAGC---AUGGua -5'
14453 5' -58.3 NC_003521.1 + 71785 0.71 0.633769
Target:  5'- uCCCCCCGGaCGACCaggaCGucacgcacgucaagAUCGUGCCGg -3'
miRNA:   3'- -GGGGGGUC-GUUGGg---GC--------------UAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 155253 0.71 0.6367
Target:  5'- gCCCCCCAguuccauccGCAACCCC--UCGUACg-- -3'
miRNA:   3'- -GGGGGGU---------CGUUGGGGcuAGCAUGgua -5'
14453 5' -58.3 NC_003521.1 + 89726 0.71 0.665959
Target:  5'- aUCCCCCAGCGGCCCgacccgaggGGUCGgcgguCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGGGg--------CUAGCau---GGUa -5'
14453 5' -58.3 NC_003521.1 + 150849 0.7 0.704586
Target:  5'- aCCCgCCGGUugAACCCCGAaCGgccGCCAg -3'
miRNA:   3'- -GGGgGGUCG--UUGGGGCUaGCa--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 171052 0.7 0.704586
Target:  5'- aCCCCCGGCucGCCcguCCGAUCaugcacuuGUGCCAc -3'
miRNA:   3'- gGGGGGUCGu-UGG---GGCUAG--------CAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 121025 0.7 0.723596
Target:  5'- cCUCCUCGGCGGCgCCGAccUCGUcGCCGc -3'
miRNA:   3'- -GGGGGGUCGUUGgGGCU--AGCA-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 235114 0.7 0.732061
Target:  5'- aCCCCCUAGCGauagacaGCCCCcgggaugguGAUCGccACCAc -3'
miRNA:   3'- -GGGGGGUCGU-------UGGGG---------CUAGCa-UGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.