miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 163582 0.67 0.867294
Target:  5'- uCCCCCCGuGUGugCCCuGUCGUcccCCGUa -3'
miRNA:   3'- -GGGGGGU-CGUugGGGcUAGCAu--GGUA- -5'
14453 5' -58.3 NC_003521.1 + 62921 0.69 0.751554
Target:  5'- gCCCUCCcGCucGCCCCGcUCGUuccGCCAc -3'
miRNA:   3'- -GGGGGGuCGu-UGGGGCuAGCA---UGGUa -5'
14453 5' -58.3 NC_003521.1 + 136810 0.69 0.751554
Target:  5'- gCCCgCCGaCGACCCCGG-CGUGCgCAUg -3'
miRNA:   3'- -GGGgGGUcGUUGGGGCUaGCAUG-GUA- -5'
14453 5' -58.3 NC_003521.1 + 201308 0.69 0.769727
Target:  5'- uCUCgCCGcGCGACCCCugGAUCGUGCUg- -3'
miRNA:   3'- -GGGgGGU-CGUUGGGG--CUAGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 57589 0.69 0.77865
Target:  5'- -gCgCCGGCGgcgaACCCCGAgucagCGUGCCGUc -3'
miRNA:   3'- ggGgGGUCGU----UGGGGCUa----GCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 152606 0.69 0.787453
Target:  5'- cCUCCUCGGC-GCCCUGGUUGgucACCAg -3'
miRNA:   3'- -GGGGGGUCGuUGGGGCUAGCa--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 126092 0.68 0.821318
Target:  5'- aCCCCCaCGGCGugCCggauccagcgguCGAucucgUCGUGCCGg -3'
miRNA:   3'- -GGGGG-GUCGUugGG------------GCU-----AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 93672 0.68 0.82941
Target:  5'- uUCCCCuGUcccgGACCCCGGUCG-GCCu- -3'
miRNA:   3'- gGGGGGuCG----UUGGGGCUAGCaUGGua -5'
14453 5' -58.3 NC_003521.1 + 85498 0.67 0.860081
Target:  5'- gCCCCCGccGgGACCCgCGGUCGUcucacccaggacGCCGa -3'
miRNA:   3'- gGGGGGU--CgUUGGG-GCUAGCA------------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 85434 0.69 0.74232
Target:  5'- gCCCCCCGcCGGCCUCG-UCGUccgcGCCGg -3'
miRNA:   3'- -GGGGGGUcGUUGGGGCuAGCA----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 235114 0.7 0.732061
Target:  5'- aCCCCCUAGCGauagacaGCCCCcgggaugguGAUCGccACCAc -3'
miRNA:   3'- -GGGGGGUCGU-------UGGGG---------CUAGCa-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 121025 0.7 0.723596
Target:  5'- cCUCCUCGGCGGCgCCGAccUCGUcGCCGc -3'
miRNA:   3'- -GGGGGGUCGUUGgGGCU--AGCA-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 111042 0.77 0.343947
Target:  5'- gCCCCaGGCGACCCUcgucuucguGGUCGUACCAUa -3'
miRNA:   3'- gGGGGgUCGUUGGGG---------CUAGCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 56931 0.75 0.457372
Target:  5'- gCCUCCAGC-ACCUCGGccUCGUGCCGc -3'
miRNA:   3'- gGGGGGUCGuUGGGGCU--AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 85647 0.73 0.568619
Target:  5'- cCCCCCCGGCAGCCgCGGcC--GCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGGgGCUaGcaUGGUa -5'
14453 5' -58.3 NC_003521.1 + 92664 0.72 0.597672
Target:  5'- uCCCCCCggucgAGCAGCCUCGGcgagGUGCCGg -3'
miRNA:   3'- -GGGGGG-----UCGUUGGGGCUag--CAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 92440 0.72 0.626931
Target:  5'- aCCCCCCAGCcuccccgcACCCCGcUCGgcuUGCCc- -3'
miRNA:   3'- -GGGGGGUCGu-------UGGGGCuAGC---AUGGua -5'
14453 5' -58.3 NC_003521.1 + 155253 0.71 0.6367
Target:  5'- gCCCCCCAguuccauccGCAACCCC--UCGUACg-- -3'
miRNA:   3'- -GGGGGGU---------CGUUGGGGcuAGCAUGgua -5'
14453 5' -58.3 NC_003521.1 + 89726 0.71 0.665959
Target:  5'- aUCCCCCAGCGGCCCgacccgaggGGUCGgcgguCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGGGg--------CUAGCau---GGUa -5'
14453 5' -58.3 NC_003521.1 + 171052 0.7 0.704586
Target:  5'- aCCCCCGGCucGCCcguCCGAUCaugcacuuGUGCCAc -3'
miRNA:   3'- gGGGGGUCGu-UGG---GGCUAG--------CAUGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.