miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 1080 0.69 0.769727
Target:  5'- uCUCgCCGcGCGACCCCugGAUCGUGCUg- -3'
miRNA:   3'- -GGGgGGU-CGUUGGGG--CUAGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 6053 0.73 0.539932
Target:  5'- -gCCCCAGCGGCCCCGcagggCGUgaucacGCCAg -3'
miRNA:   3'- ggGGGGUCGUUGGGGCua---GCA------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 6148 0.66 0.906376
Target:  5'- gCCCCaggaagagCAGCAACCCCuggCGggGCCAg -3'
miRNA:   3'- -GGGGg-------GUCGUUGGGGcuaGCa-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 8254 0.67 0.845097
Target:  5'- gCCCCCCgcucaccacacAGCAGCCCCcGUaGUagGCCAc -3'
miRNA:   3'- -GGGGGG-----------UCGUUGGGGcUAgCA--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 11926 0.66 0.887758
Target:  5'- gUCCCCCAGCcgGGCCCgGcUgGUGCUc- -3'
miRNA:   3'- -GGGGGGUCG--UUGGGgCuAgCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 12378 0.66 0.917723
Target:  5'- aCCCUCCGGCcucuuucACgCCGAguUCGUGCUg- -3'
miRNA:   3'- -GGGGGGUCGu------UGgGGCU--AGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 18903 0.66 0.900381
Target:  5'- gCgCCgCGGCAGCCCCGAagGguggcGCCGc -3'
miRNA:   3'- -GgGGgGUCGUUGGGGCUagCa----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 21414 0.68 0.821318
Target:  5'- gCCCUCUGGCAgcuacucgGCCUCG-UCGUGCCc- -3'
miRNA:   3'- -GGGGGGUCGU--------UGGGGCuAGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 22978 0.66 0.906376
Target:  5'- aCCCCCCcccccCCCCGAgagacgacacacUCGUACCc- -3'
miRNA:   3'- -GGGGGGucguuGGGGCU------------AGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 26328 0.66 0.900381
Target:  5'- -aUCCCAGCAacGCCCUGGUCuuagGCCu- -3'
miRNA:   3'- ggGGGGUCGU--UGGGGCUAGca--UGGua -5'
14453 5' -58.3 NC_003521.1 + 36592 0.66 0.906376
Target:  5'- aUCCUCCAGC--CCCUGAUC--ACCAa -3'
miRNA:   3'- -GGGGGGUCGuuGGGGCUAGcaUGGUa -5'
14453 5' -58.3 NC_003521.1 + 39939 0.67 0.874314
Target:  5'- cCUCCgCCAGCAGCUCCagcagCGUAUCGg -3'
miRNA:   3'- -GGGG-GGUCGUUGGGGcua--GCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 42525 0.68 0.828608
Target:  5'- aCCCCCAGgGaacuccagucACCCCGAugacugcUgGUGCCGc -3'
miRNA:   3'- gGGGGGUCgU----------UGGGGCU-------AgCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 56931 0.75 0.457372
Target:  5'- gCCUCCAGC-ACCUCGGccUCGUGCCGc -3'
miRNA:   3'- gGGGGGUCGuUGGGGCU--AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 57589 0.69 0.77865
Target:  5'- -gCgCCGGCGgcgaACCCCGAgucagCGUGCCGUc -3'
miRNA:   3'- ggGgGGUCGU----UGGGGCUa----GCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 62921 0.69 0.751554
Target:  5'- gCCCUCCcGCucGCCCCGcUCGUuccGCCAc -3'
miRNA:   3'- -GGGGGGuCGu-UGGGGCuAGCA---UGGUa -5'
14453 5' -58.3 NC_003521.1 + 63034 0.66 0.887758
Target:  5'- gCCCaCCAGCGgacagGCCCCG-UCGgcCCu- -3'
miRNA:   3'- gGGG-GGUCGU-----UGGGGCuAGCauGGua -5'
14453 5' -58.3 NC_003521.1 + 63107 0.66 0.912158
Target:  5'- gCCCUCCAGCAguACCagcaGAUgGUcaGCCAg -3'
miRNA:   3'- -GGGGGGUCGU--UGGgg--CUAgCA--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 69391 0.67 0.881137
Target:  5'- aCCCCCCuGCu-CCUCaAUCGcACCGUg -3'
miRNA:   3'- -GGGGGGuCGuuGGGGcUAGCaUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 71785 0.71 0.633769
Target:  5'- uCCCCCCGGaCGACCaggaCGucacgcacgucaagAUCGUGCCGg -3'
miRNA:   3'- -GGGGGGUC-GUUGGg---GC--------------UAGCAUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.