miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 202337 0.67 0.755083
Target:  5'- cGGGGCUCgaguaagaacgccgGCGCCCaccgccagAGCCCAGacGGu -3'
miRNA:   3'- cCCCCGAGa-------------UGUGGG--------UCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 144893 0.67 0.751483
Target:  5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3'
miRNA:   3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 47832 0.67 0.795266
Target:  5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3'
miRNA:   3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 115826 0.67 0.786739
Target:  5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3'
miRNA:   3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 4214 0.67 0.77809
Target:  5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3'
miRNA:   3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 105628 0.68 0.695986
Target:  5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3'
miRNA:   3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 191246 0.68 0.732353
Target:  5'- aGGaGGCg--GCGCCgCGGCCCacgcggcAGGUGGu -3'
miRNA:   3'- cCC-CCGagaUGUGG-GUCGGG-------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 168164 0.68 0.724047
Target:  5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3'
miRNA:   3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5'
14464 3' -60.6 NC_003521.1 + 175390 0.68 0.694098
Target:  5'- cGGGGacccaugACCCGGCgCAGGUGGg -3'
miRNA:   3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5'
14464 3' -60.6 NC_003521.1 + 120236 0.69 0.677032
Target:  5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3'
miRNA:   3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 150263 0.69 0.677032
Target:  5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3'
miRNA:   3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 54337 0.69 0.638791
Target:  5'- cGGGGCUCU-CGCCCugGGCCacucggGGcGUGGc -3'
miRNA:   3'- cCCCCGAGAuGUGGG--UCGGg-----UC-CACC- -5'
14464 3' -60.6 NC_003521.1 + 227217 0.7 0.60621
Target:  5'- -aGGGCUacgaagagcccgGCACCCaccAGaCCCAGGUGGa -3'
miRNA:   3'- ccCCCGAga----------UGUGGG---UC-GGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 206614 0.7 0.610038
Target:  5'- cGGGcGCcgUCUACGCC--GCCCuGGUGGg -3'
miRNA:   3'- cCCC-CG--AGAUGUGGguCGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 200384 0.7 0.627285
Target:  5'- -cGGGCUagagcgcgcgaGCACCUGGCCguGGUGGa -3'
miRNA:   3'- ccCCCGAga---------UGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 110009 0.7 0.600474
Target:  5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3'
miRNA:   3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5'
14464 3' -60.6 NC_003521.1 + 218774 0.7 0.581414
Target:  5'- uGGGGUgUCUGCGUCCGGCUCugacuucuGGGUGGg -3'
miRNA:   3'- cCCCCG-AGAUGUGGGUCGGG--------UCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.