miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 175390 0.68 0.694098
Target:  5'- cGGGGacccaugACCCGGCgCAGGUGGg -3'
miRNA:   3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 105628 0.68 0.695986
Target:  5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3'
miRNA:   3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 168164 0.68 0.724047
Target:  5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3'
miRNA:   3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5'
14464 3' -60.6 NC_003521.1 + 191246 0.68 0.732353
Target:  5'- aGGaGGCg--GCGCCgCGGCCCacgcggcAGGUGGu -3'
miRNA:   3'- cCC-CCGagaUGUGG-GUCGGG-------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 144893 0.67 0.751483
Target:  5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3'
miRNA:   3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 127745 0.67 0.751483
Target:  5'- cGGcGGCcgUCUGCGCCUcguAGCCCggaAGGUGc -3'
miRNA:   3'- cCC-CCG--AGAUGUGGG---UCGGG---UCCACc -5'
14464 3' -60.6 NC_003521.1 + 202337 0.67 0.755083
Target:  5'- cGGGGCUCgaguaagaacgccgGCGCCCaccgccagAGCCCAGacGGu -3'
miRNA:   3'- cCCCCGAGa-------------UGUGGG--------UCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 22354 0.67 0.760454
Target:  5'- cGGGGCcaCUGCGCCCAcGgCguGGUGc -3'
miRNA:   3'- cCCCCGa-GAUGUGGGU-CgGguCCACc -5'
14464 3' -60.6 NC_003521.1 + 95197 0.67 0.769326
Target:  5'- cGGaaCUCcACGCCCGGCaCCGGGUGc -3'
miRNA:   3'- cCCccGAGaUGUGGGUCG-GGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 107797 0.67 0.769326
Target:  5'- uGGGGGCUgCUgAUACUguGCC--GGUGGc -3'
miRNA:   3'- -CCCCCGA-GA-UGUGGguCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 4214 0.67 0.77809
Target:  5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3'
miRNA:   3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 157063 0.67 0.786739
Target:  5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3'
miRNA:   3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 115826 0.67 0.786739
Target:  5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3'
miRNA:   3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 47832 0.67 0.795266
Target:  5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3'
miRNA:   3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 6532 0.67 0.795266
Target:  5'- -aGGGCggUCUGCGuCCCGcCCCAGGgcaGGg -3'
miRNA:   3'- ccCCCG--AGAUGU-GGGUcGGGUCCa--CC- -5'
14464 3' -60.6 NC_003521.1 + 238475 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 38247 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 238568 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.