Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14464 | 3' | -60.6 | NC_003521.1 | + | 105628 | 0.68 | 0.695986 |
Target: 5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3' miRNA: 3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 107797 | 0.67 | 0.769326 |
Target: 5'- uGGGGGCUgCUgAUACUguGCC--GGUGGc -3' miRNA: 3'- -CCCCCGA-GA-UGUGGguCGGguCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 110009 | 0.7 | 0.600474 |
Target: 5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3' miRNA: 3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 112620 | 1.12 | 0.001222 |
Target: 5'- aGGGGGCUCUACACCCAGCCCAGGUGGa -3' miRNA: 3'- -CCCCCGAGAUGUGGGUCGGGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 115642 | 0.66 | 0.820045 |
Target: 5'- aGGGGCUCgugcgugucgGCGcCCCAGUggCGGGUGa -3' miRNA: 3'- cCCCCGAGa---------UGU-GGGUCGg-GUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 115826 | 0.67 | 0.786739 |
Target: 5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3' miRNA: 3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 120236 | 0.69 | 0.677032 |
Target: 5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3' miRNA: 3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 120943 | 0.72 | 0.507768 |
Target: 5'- cGGGGCgacgaggagaaccgaCUGCggACCgaGGCCCGGGUGGa -3' miRNA: 3'- cCCCCGa--------------GAUG--UGGg-UCGGGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 121794 | 0.72 | 0.479926 |
Target: 5'- aGGuGGCgguacUUGCGCUCGGCCguGGUGGg -3' miRNA: 3'- cCC-CCGa----GAUGUGGGUCGGguCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 127745 | 0.67 | 0.751483 |
Target: 5'- cGGcGGCcgUCUGCGCCUcguAGCCCggaAGGUGc -3' miRNA: 3'- cCC-CCG--AGAUGUGGG---UCGGG---UCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 130979 | 0.66 | 0.811106 |
Target: 5'- uGGGGGCagUGagcacggUACCCAGCCUgacgcGGGcGGc -3' miRNA: 3'- -CCCCCGagAU-------GUGGGUCGGG-----UCCaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 135160 | 0.77 | 0.2825 |
Target: 5'- uGGuGGuGUUCUGCGCCaggaAGCCCAGGaUGGu -3' miRNA: 3'- -CC-CC-CGAGAUGUGGg---UCGGGUCC-ACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 138789 | 0.66 | 0.828013 |
Target: 5'- --cGGCcgugCUGCGCgCCguGGCCCAGGUGc -3' miRNA: 3'- cccCCGa---GAUGUG-GG--UCGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 144893 | 0.67 | 0.751483 |
Target: 5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3' miRNA: 3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 149031 | 0.66 | 0.811926 |
Target: 5'- uGGGGGU-----GCCCAaccgccGCCCGGGUGu -3' miRNA: 3'- -CCCCCGagaugUGGGU------CGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 150263 | 0.69 | 0.677032 |
Target: 5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3' miRNA: 3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 157063 | 0.67 | 0.786739 |
Target: 5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3' miRNA: 3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 165451 | 0.66 | 0.811926 |
Target: 5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3' miRNA: 3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 168164 | 0.68 | 0.724047 |
Target: 5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3' miRNA: 3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 175390 | 0.68 | 0.694098 |
Target: 5'- cGGGGacccaugACCCGGCgCAGGUGGg -3' miRNA: 3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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